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Adjust diagnostic figure sizes
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bodkan committed Oct 24, 2024
1 parent e1399c8 commit be9aa37
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions vignettes/vignette-06-diagnostics.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -440,32 +440,32 @@ plot_prediction(predY)

We can compare the divergences between models directly to see which model gives the most reasonable posterior predictive check results more clearly:

```{r}
```{r, fig.width=10, fig.height=13}
cowplot::plot_grid(
plot_prediction(predX, "divergence"),
plot_prediction(predY, "divergence"),
plot_prediction(predZ, "divergence"),
nrow = 1
ncol = 1
)
```

We can see that posterior predictive checks for nucleotide diversity are a little less clear as there are no extremely dramatic outliers as it's the case for divergence above:

```{r}
```{r, fig.width=10, fig.height=13}
cowplot::plot_grid(
plot_prediction(predX, "diversity"),
plot_prediction(predY, "diversity"),
plot_prediction(predZ, "diversity"),
nrow = 1
ncol = 1
)
```

```{r}
```{r, fig.width=10, fig.height=13}
cowplot::plot_grid(
plot_prediction(predX, "f4"),
plot_prediction(predY, "f4"),
plot_prediction(predZ, "f4"),
nrow = 1
ncol = 1
)
```

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