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Add QUAST visualization
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misialq committed Oct 16, 2024
1 parent 572dde7 commit 445c622
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Expand Up @@ -63,6 +63,7 @@ qiime assembly evaluate-contigs \
--o-visualization ./results/contigs.qzv \
--verbose
```
Your visualization should look similar to [this one](https://view.qiime2.org/visualization/?src=https://raw.githubusercontent.com/bokulich-lab/moshpit-docs/main/moshpit_docs/data/contigs.qzv).

## Index contigs
In this step, we generate an index for the assembled contigs. This index is required for mapping reads to the contigs
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