Create prunePB.sh

bpt26 · Nov 29, 2021 · c5fb6ab · c5fb6ab
1 parent b489ed7
commit c5fb6ab
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/4_comparisons/prunePB.sh b/4_comparisons/prunePB.sh
@@ -0,0 +1,5 @@
+for i in {1..50}
+do
+  matUtils extract -i STARTING_GROUND_TRUTH_TREE.pb -s ../CUMULATIVE_SAMPLES/${i}_samples.txt -o STARTING_GROUND_TRUTH_TREE_PRUNED_${i}.pb -T 30
+  matUtils extract -i STARTING_GROUND_TRUTH_TREE_PRUNED_${i}.pb -v SIM_CUMULATIVE_VCFS/${i}.vcf -T 30
+done;