updates to the automatic generation GA workflows #121
Workflow file for this run
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| name: test generating other formats | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| permissions: | |
| contents: write | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout this repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install the required python packages | |
| run: python -m pip install .[test] | |
| - name: Other installations | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential git wget curl | |
| - name: Generate other model representations | |
| run: | | |
| cd linkml-schema | |
| mkdir tests_artifacts | |
| mkdir tests_artifacts/json-schema-autogen | |
| mkdir tests_artifacts/jsonld-context-autogen | |
| mkdir tests_artifacts/models_py-autogen | |
| mkdir tests_artifacts/erdiagram-autogen | |
| for file in *.yaml; do | |
| if [[ "$file" != *bican* && "$file" != *core* ]]; then | |
| name=`basename ${file} .yaml`; | |
| echo "Processing $name file.."; | |
| gen-json-schema ${file} > tests_artifacts/json-schema-autogen/${name}.json; | |
| # generating jsonld context and removing generation_date field to avoid constant updates | |
| gen-jsonld-context ${file} > tests_artifacts/jsonld-context-autogen/${name}.context.jsonld; | |
| sed -i "/generation_date/d" tests_artifacts/jsonld-context-autogen/${name}.context.jsonld; | |
| gen-pydantic ${file} > tests_artifacts/models_py-autogen/${name}.py; | |
| if [ ${name} = "library_generation" ] || [ ${name} = "genome_annotation" ]; then | |
| echo "Creating and Fixing diagrams for $name"; | |
| python ../utils/fix_and_create_erdiagram.py | |
| else | |
| gen-erdiagram ${file} > tests_artifacts/erdiagram-autogen/${name}.md; | |
| fi | |
| fi | |
| done | |
| ls -l tests_artifacts | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: artifacts | |
| path: tests_artifacts/json-schema-autogen/* | |
| - name: Download all artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: artifacts | |
| path: ./tmp # Specify the directory to download artifacts into | |
| # - name: Create a new testing branch to check autogenerated formats (deleting first if the branch exists) | |
| # run: | | |
| # branch_name="testing-autogen-formats" | |
| # | |
| # # Check if the branch exists locally | |
| # if git show-ref --verify --quiet refs/heads/$branch_name; then | |
| # echo "Branch $branch_name exists locally. Deleting it." | |
| # git branch -D $branch_name | |
| # fi | |
| # # creating the new branch | |
| # git checkout -b $branch_name | |
| # | |
| # | |
| # - name: Creating another branch and to check other model representations | |
| # run: | | |
| # branch_name="testing-autogen-formats" | |
| # git config --local user.email "[email protected]" | |
| # git config --local user.name "GitHub Action" | |
| # if ! git diff --quiet; then | |
| # git add json-schema-autogen/*.json | |
| # git add jsonld-context-autogen/*.context.jsonld | |
| # git add models_py-autogen/*.py | |
| # git add erdiagram-autogen/*.md | |
| # git commit -m "generate another formats and add them to the testing branch" | |
| # git push | |
| # else | |
| # echo "No changes to commit" | |
| # fi | |