updates to the automatic generation GA workflows #131
Workflow file for this run
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| name: test generating other formats | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| permissions: | |
| contents: write | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout this repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install the required python packages | |
| run: python -m pip install .[test] | |
| - name: Other installations | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential git wget curl colordiff | |
| - name: Generate other model representations | |
| run: | | |
| cd linkml-schema | |
| mkdir tests_artifacts | |
| mkdir tests_artifacts/json-schema-autogen | |
| mkdir tests_artifacts/jsonld-context-autogen | |
| mkdir tests_artifacts/models_py-autogen | |
| mkdir tests_artifacts/erdiagram-autogen | |
| for file in *.yaml; do | |
| if [[ "$file" != *bican* && "$file" != *core* ]]; then | |
| name=`basename ${file} .yaml`; | |
| echo "Processing $name file.."; | |
| gen-json-schema ${file} > tests_artifacts/json-schema-autogen/${name}.json; | |
| echo "Diff in json schema for $name file (comparing to the current version)" | |
| colordiff ../json-schema-autogen/${name}.json tests_artifacts/json-schema-autogen/${name}.json || true | |
| # generating jsonld context and removing generation_date field to avoid constant updates | |
| gen-jsonld-context ${file} > tests_artifacts/jsonld-context-autogen/${name}.context.jsonld; | |
| sed -i "/generation_date/d" tests_artifacts/jsonld-context-autogen/${name}.context.jsonld; | |
| echo "Diff in jsonld context for $name file (comparing to the current version)" | |
| colordiff ../jsonld-context-autogen/${name}.context.jsonld tests_artifacts/jsonld-context-autogen/${name}.context.jsonld || true | |
| gen-pydantic ${file} > tests_artifacts/models_py-autogen/${name}.py; | |
| echo "Diff in pydantic model for $name file (comparing to the current version)" | |
| colordiff ../models_py-autogen/${name}.py tests_artifacts/models_py-autogen/${name}.py || true | |
| if [ ${name} = "library_generation" ] || [ ${name} = "genome_annotation" ]; then | |
| echo "Creating and Fixing diagrams for $name"; | |
| python ../utils/fix_and_create_erdiagram.py | |
| else | |
| gen-erdiagram ${file} > tests_artifacts/erdiagram-autogen/${name}.md; | |
| fi | |
| fi | |
| done | |
| ls -l tests_artifacts/json-schema-autogen | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: artifacts | |
| path: linkml-schema/tests_artifacts/* |