Merge pull request #55 from puja-trivedi/ansrs_modifications_20240523 #76
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| name: generating other formats | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - 'linkml-schema/**' | |
| permissions: | |
| contents: write | |
| jobs: | |
| generate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout this repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install the required python packages | |
| run: python -m pip install .[test] | |
| - name: Other installations | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential git wget curl | |
| - name: Generate other model representations | |
| run: | | |
| cd linkml-schema | |
| for file in *.yaml; do | |
| if [ "$file" != "bican_biolink.yaml" ]; then | |
| name=`basename ${file} .yaml`; | |
| echo "Processing $name file.."; | |
| gen-json-schema ${file} > ../json-schema-autogen/${name}.json; | |
| # generating jsonld context and removing generation_date field to avoid constant updates | |
| gen-jsonld-context ${file} > ../jsonld-context-autogen/${name}.context.jsonld; | |
| sed -i "/generation_date/d" ../jsonld-context-autogen/${name}.context.jsonld; | |
| gen-pydantic --pydantic-version 2 ${file} > ../models_py-autogen/${name}.py; | |
| if [ ${name} = "library_generation" ] || [ ${name} = "genome_annotation" ]; then | |
| echo "Creating and Fixing diagrams for $name"; | |
| python ../utils/fix_and_create_erdiagram.py | |
| else | |
| gen-erdiagram ${file} > ../erdiagram-autogen/${name}.md; | |
| fi | |
| fi | |
| done | |
| cd .. | |
| - name: Adding other model representations to git | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add json-schema-autogen/*.json | |
| git add jsonld-context-autogen/*.context.jsonld | |
| git add models_py-autogen/*.py | |
| git add erdiagram-autogen/*.md | |
| git commit -m "generate another formats" | |
| git push |