Merge pull request #56 from djarecka/fix/model #46

	name: generating documentation

	on:
	push:
	branches:
	- main

	permissions:
	contents: write

	jobs:
	generate:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout this repository
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: 3.9

	- name: Install the required python packages
	run: python -m pip install .[docs]

	- name: Other installations
	run: \|
	sudo apt-get update
	sudo apt-get install -y build-essential git wget curl

	- name: Create local docs
	run: \|
	mkdir docs
	cp -r src/docs/* docs/
	touch docs/.nojekyll
	cp erdiagram-autogen/anatomical_structure.md docs/anatomical_structure.md
	cp erdiagram-autogen/genome_annotation.md docs/genome_annotation.md
	cp erdiagram-autogen/library_generation.md docs/library_generation.md
	gen-doc -d docs linkml-schema/library_generation.yaml
	mv docs/index.md docs/index_library_generation.md
	gen-doc -d docs linkml-schema/anatomical_structure.yaml
	mv docs/index.md docs/index_anatomical_structure.md
	gen-doc -d docs linkml-schema/genome_annotation.yaml
	mv docs/index.md docs/index_genome_annotation.md
	mv docs/index_main.md docs/index.md



	- name: Deploy to GitHub Pages
	run: mkdocs gh-deploy --force

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