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104 changes: 54 additions & 50 deletions dev/api.html

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Expand Up @@ -572,7 +572,7 @@ <h3>Preprocessing<a class="headerlink" href="#preprocessing" title="Link to this
<a href="../../generated/braindecode.preprocessing.preprocess.html#braindecode.preprocessing.preprocess" title="braindecode.preprocessing.preprocess" class="sphx-glr-backref-module-braindecode-preprocessing sphx-glr-backref-type-py-function"><span class="n">preprocess</span></a><span class="p">(</span><a href="../../generated/braindecode.datasets.BaseConcatDataset.html#braindecode.datasets.BaseConcatDataset" title="braindecode.datasets.BaseConcatDataset" class="sphx-glr-backref-module-braindecode-datasets sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">test_set</span></a><span class="p">,</span> <span class="p">[</span><a href="../../generated/braindecode.preprocessing.Preprocessor.html#braindecode.preprocessing.Preprocessor" title="braindecode.preprocessing.Preprocessor" class="sphx-glr-backref-module-braindecode-preprocessing sphx-glr-backref-type-py-class"><span class="n">Preprocessor</span></a><span class="p">(</span><span class="s2">&quot;crop&quot;</span><span class="p">,</span> <span class="n">tmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">tmax</span><span class="o">=</span><span class="mi">24</span><span class="p">)],</span> <span class="n">n_jobs</span><span class="o">=-</span><span class="mi">1</span><span class="p">)</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;braindecode.datasets.base.BaseConcatDataset object at 0x7f73eb814f70&gt;
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;braindecode.datasets.base.BaseConcatDataset object at 0x7f9ca0af1990&gt;
</pre></div>
</div>
<p>In time series targets setup, targets variables are stored in mne.Raw object as channels
Expand Down Expand Up @@ -805,14 +805,14 @@ <h2>Training<a class="headerlink" href="#training" title="Link to this heading">
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span> epoch r2_train r2_valid train_loss valid_loss lr dur
------- ---------- ---------- ------------ ------------ ------ ------
1 -23.7826 -4.6087 1.8225 11.7419 0.0006 0.5474
2 -1.1990 -0.1716 1.5134 2.6475 0.0006 0.4923
3 -0.3654 -0.4985 1.2625 3.4645 0.0005 0.4879
4 -0.4383 -0.2731 1.2058 2.9438 0.0004 0.4945
5 -0.5982 -0.1512 1.1027 2.6529 0.0002 0.4849
6 -0.6090 -0.1255 1.1121 2.5886 0.0001 0.4831
7 -0.4455 -0.1445 0.9618 2.6339 0.0000 0.4919
8 -0.2790 -0.1755 1.0927 2.7063 0.0000 0.4835
1 -23.7826 -4.6087 1.8225 11.7419 0.0006 0.5845
2 -1.1990 -0.1716 1.5134 2.6475 0.0006 0.4477
3 -0.3654 -0.4985 1.2625 3.4645 0.0005 0.4636
4 -0.4383 -0.2731 1.2058 2.9438 0.0004 0.4451
5 -0.5982 -0.1512 1.1027 2.6529 0.0002 0.4606
6 -0.6090 -0.1255 1.1121 2.5886 0.0001 0.4484
7 -0.4455 -0.1445 0.9618 2.6339 0.0000 0.4667
8 -0.2790 -0.1755 1.0927 2.7063 0.0000 0.4447
</pre></div>
</div>
<p>Obtaining predictions and targets for the test, train, and validation dataset</p>
Expand Down Expand Up @@ -933,8 +933,8 @@ <h2>Plot Results<a class="headerlink" href="#plot-results" title="Link to this h
<a href="https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.tight_layout.html#matplotlib.pyplot.tight_layout" title="matplotlib.pyplot.tight_layout" class="sphx-glr-backref-module-matplotlib-pyplot sphx-glr-backref-type-py-function"><span class="n">plt</span><span class="o">.</span><span class="n">tight_layout</span></a><span class="p">()</span>
</pre></div>
</div>
<img src="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" srcset="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" alt="plot bcic iv 4 ecog cropped" class = "sphx-glr-single-img"/><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (2 minutes 41.187 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1846 MB</p>
<img src="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" srcset="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" alt="plot bcic iv 4 ecog cropped" class = "sphx-glr-single-img"/><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (2 minutes 45.312 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1222 MB</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-advanced-training-plot-bcic-iv-4-ecog-cropped-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../../_downloads/10fc813a8f78253f4bf301264950f5c1/plot_bcic_iv_4_ecog_cropped.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_bcic_iv_4_ecog_cropped.ipynb</span></code></a></p>
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14 changes: 7 additions & 7 deletions dev/auto_examples/advanced_training/plot_data_augmentation.html
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Expand Up @@ -566,7 +566,7 @@ <h3><a class="toc-backref" href="#id3" role="doc-backlink">Preprocessing</a><a c
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/braindecode/braindecode/braindecode/preprocessing/preprocess.py:69: UserWarning: Preprocessing choices with lambda functions cannot be saved.
warn(&quot;Preprocessing choices with lambda functions cannot be saved.&quot;)

&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7f73eb679210&gt;
&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7f9ca050b5b0&gt;
</pre></div>
</div>
</section>
Expand Down Expand Up @@ -756,10 +756,10 @@ <h3><a class="toc-backref" href="#id10" role="doc-backlink">Create an EEGClassif
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span> epoch train_accuracy train_loss valid_acc valid_accuracy valid_loss lr dur
------- ---------------- ------------ ----------- ---------------- ------------ ------ ------
1 0.2639 1.4655 0.2639 0.2639 1.5266 0.0006 1.7552
2 0.3299 1.3119 0.3194 0.3194 1.3948 0.0005 1.5900
3 0.4757 1.1941 0.2986 0.2986 1.3259 0.0002 1.5980
4 0.5625 1.1671 0.3333 0.3333 1.3025 0.0000 1.5785
1 0.2639 1.4655 0.2639 0.2639 1.5266 0.0006 1.7596
2 0.3299 1.3119 0.3194 0.3194 1.3948 0.0005 1.5837
3 0.4757 1.1941 0.2986 0.2986 1.3259 0.0002 1.5936
4 0.5625 1.1671 0.3333 0.3333 1.3025 0.0000 1.5889

&lt;class &#39;braindecode.classifier.EEGClassifier&#39;&gt;[initialized](
module_=============================================================================================================================================
Expand Down Expand Up @@ -813,8 +813,8 @@ <h3><a class="toc-backref" href="#id12" role="doc-backlink">Setting the data aug
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><a href="../../generated/braindecode.datasets.BaseConcatDataset.html#braindecode.datasets.BaseConcatDataset" title="braindecode.datasets.BaseConcatDataset" class="sphx-glr-backref-module-braindecode-datasets sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">train_set</span></a><span class="o">.</span><a href="../../generated/braindecode.augmentation.FrequencyShift.html#braindecode.augmentation.FrequencyShift" title="braindecode.augmentation.FrequencyShift" class="sphx-glr-backref-module-braindecode-augmentation sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">transform</span></a> <span class="o">=</span> <a href="../../generated/braindecode.augmentation.Compose.html#braindecode.augmentation.Compose" title="braindecode.augmentation.Compose" class="sphx-glr-backref-module-braindecode-augmentation sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">composed_transforms</span></a>
</pre></div>
</div>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 16.858 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1393 MB</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 17.582 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1167 MB</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-advanced-training-plot-data-augmentation-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../../_downloads/1d879df548fa18be8c23d9ca0dc008d4/plot_data_augmentation.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_data_augmentation.ipynb</span></code></a></p>
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Expand Up @@ -587,7 +587,7 @@ <h3><a class="toc-backref" href="#id10" role="doc-backlink">Preprocessing</a><a
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/braindecode/braindecode/braindecode/preprocessing/preprocess.py:69: UserWarning: Preprocessing choices with lambda functions cannot be saved.
warn(&quot;Preprocessing choices with lambda functions cannot be saved.&quot;)

&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7f72ff692530&gt;
&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7f9ca083a2c0&gt;
</pre></div>
</div>
</section>
Expand Down Expand Up @@ -1352,8 +1352,8 @@ <h3><a class="toc-backref" href="#id19" role="doc-backlink">References</a><a cla
Journal of Neural Engineering, 18(4), 046020.</p>
</aside>
</aside>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 31.943 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1083 MB</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 32.626 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1186 MB</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-advanced-training-plot-data-augmentation-search-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../../_downloads/2466f8ec5c733d0bd65e187b45d875cc/plot_data_augmentation_search.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_data_augmentation_search.ipynb</span></code></a></p>
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