Releases: brainglobe/cellfinder
Releases · brainglobe/cellfinder
v1.5.0
What's Changed
- Import Qt elements from qt-niu by @adamltyson in #485
Full Changelog: v1.4.1...v1.5.0
v1.4.1
What's Changed
- Replaced NIU upload action with separate steps by @IgorTatarnikov in #478
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #480
- Use pypa/gh-action-pypi-publish stable release v1 by @lochhh in #481
- Use explicit len(arr)-count instead of just -count to handle count=0 by @matham in #484
New Contributors
Full Changelog: v1.4.0...v1.4.1
v1.4.0
What's Changed
- Move detection (2d/3d filtering, structure splitting) to PyTorch by @matham in #440
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #467
- Notify slack on scheduled test failure by @IgorTatarnikov in #469
- ensure trained_model is a Path before calling .suffix by @alessandrofelder in #471
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #472
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #474
- Unpin keras by @IgorTatarnikov in #475
- bump headless display action 2->3 by @alessandrofelder in #476
Full Changelog: v1.3.3...v1.4.0
v1.4.0-alpha.0
What's Changed
Full Changelog: v1.3.3...v1.4.0alpha0
v1.3.3
What's Changed
- Unpin numpy by @IgorTatarnikov in #452
- Remove x86 macOS runners from the test suite by @IgorTatarnikov in #453
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #455
- Unpin numpy by @adamltyson in #457
- Schedule weekly tests by @IgorTatarnikov in #458
- Pin
keras
version to 3.5.0 by @IgorTatarnikov in #462 - Allow napari GUI to accept custom weights by @IgorTatarnikov in #460
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #461
Full Changelog: v1.3.2...v1.3.3
v1.3.2
What's Changed
- Conform to new linting rules by @IgorTatarnikov in #447
- temporarily depend on numpy<2 by @alessandrofelder in #448
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #445
Full Changelog: v1.3.1...v1.3.2
v1.3.1
What's Changed
- Update supported Python versions by @adamltyson in #436
- Add citation to readme by @adamltyson in #438
- Prevent zero underflow in volume by @matham in #437
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #441
- Standardise contact information in readme by @adamltyson in #442
- Added xfail to tests that fail due to logging bug by @IgorTatarnikov in #444
Full Changelog: v1.3.0...v1.3.1
v1.3.0
Move classification to PyTorch
This release changes the dependency for classification to PyTorch (from TensorFlow). Users are advised to create a new environment before upgrading.
What's Changed
- Update caching by @adamltyson in #422
- Updating to Keras 3.0 and migrating to PyTorch by @IgorTatarnikov in #418
- Update init.py by @adamltyson in #427
- Update final few lines to python 3.11 by @adamltyson in #428
- Moved force cpu into cellfinder function by @IgorTatarnikov in #430
- Remove test dependency duplication by @adamltyson in #431
- Update default inference batch size by @adamltyson in #432
- Enable MPS fallback by default by @IgorTatarnikov in #433
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #434
Full Changelog: v1.2.0...v1.3.0
v1.3.0rc2
What's Changed
- Remove test dependency duplication by @adamltyson in #431
- Update default inference batch size by @adamltyson in #432
- Enable MPS fallback by default by @IgorTatarnikov in #433
Full Changelog: v1.3.0rc1...v1.3.0rc2
v1.3.0rc1
What's Changed
- Update init.py by @adamltyson in #427
- Update final few lines to python 3.11 by @adamltyson in #428
- Moved force cpu into cellfinder function by @IgorTatarnikov in #430
Full Changelog: v1.3.0rc0...v1.3.0rc1