Releases: broadinstitute/beast-beagle-cuda
BEAST X v10.5.0 beta3
Update to latest BEAST X v10.5.0 beta3
v1.10.5pre_thorney_0.1.2
- beast 1.10.5pre_thorney_0.1.2
- beagle 4.0.0
beast-beagle-cuda v1.10.5pre_thorney_0.1.1_2
4721143
tomkinsc
Chris Tomkins-Tinch
remove dsub --nvidia-driver-version argument since it is deprecated and now ignored by the pipelines API; see:
DataBiosphere/dsub@0421018
update to new google api, google-cls-v2
see: https://github.com/DataBiosphere/dsub#getting-started-on-google-cloud
Note: APIs must be enabled before use, which can be done here:
https://console.cloud.google.com/flows/enableapi?apiid=lifesciences.googleapis.com,storage_component,compute_component&redirect=https://console.cloud.google.com
update beast to 1.10.5pre_thorney_v0.1.1, to support features noted on the page "Approaches for analyzing large phylogenetic datasets"; see: https://beast.community/thorney_beast
update cuda baseimage to reflect latest driver version in current COS image
The nvidia driver version in the container-optimized OS host images lags the current versions.
see: DataBiosphere/dsub#224
For the driver version in the current COS image, see:
https://cloud.google.com/container-optimized-os/docs/release-notes
update readme example for setting the BEAST version
update build toolchain packages
omit python-crcmod
do not pin google-cloud-sdk to specific debian version (since "focal" build for 20.04 is not in apt repo)
gcc 9
switch to CMake-based build as detailed in the current beagle build/install instructions:
https://github.com/beagle-dev/beagle-lib/wiki/LinuxInstallInstructions
localize more recent beagle code than 3.1.2 tag from 2018
remove deprecated "make check" call
beast-beagle-cuda v1.10.5pre
small tweaks to dsub script and convert Dockerfile from ENTRYPOINT to CMD
beast-beagle-cuda v1.10.4
beast-beagle-cuda packaged with BEAST/BEAUTi v1.10.4