Hotfix for BackupWorkspace.wdl and minor change to the hrp2/`hrp3…

…` detection wdl. (#464) * Added `volatile: true` to `BackupWorkspace.wdl task. * Increased disk space for `PfalciparumHrp2Hrp3Status.wdl` * Fixed disk size to depend on all inputs for `PfalciparumHrp2Hrp3Status.wdl`
broadinstitute · Aug 9, 2024 · aab3d7a · aab3d7a
1 parent ca83c19
commit aab3d7a
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diff --git a/wdl/pipelines/TechAgnostic/TertiaryAnalysis/PfalciparumHrp2Hrp3Status.wdl b/wdl/pipelines/TechAgnostic/TertiaryAnalysis/PfalciparumHrp2Hrp3Status.wdl
@@ -55,7 +55,7 @@ task IsLocusDeleted {
         RuntimeAttr? runtime_attr_override
     }
 
-    Int disk_size = 1 + ceil(size(bam, "GB"))
+    Int disk_size = 1 + 2*ceil(size(bam, "GB"))  + 2*ceil(size(bai, "GB"))
 
     command <<<
         set -euxo pipefail

diff --git a/wdl/pipelines/TechAgnostic/Utility/BackupWorkspace.wdl b/wdl/pipelines/TechAgnostic/Utility/BackupWorkspace.wdl
@@ -44,6 +44,7 @@ task RunBackupWithPython {
 
     meta {
         description: "Backup the workspace with the given info."
+        volatile: true
     }
     parameter_meta {
         namespace: "Namespace to which the workspace belongs."