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broadinstitute · Nov 12, 2024 · cc79b1a · cc79b1a
1 parent 9f6473b
commit cc79b1a
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/wdl/tasks/VariantCalling/PBSV.wdl b/wdl/tasks/VariantCalling/PBSV.wdl
@@ -202,7 +202,7 @@ task Call {
         set -euxo pipefail
 
         pbsv call \
-            -j 0 \
+            -j 16 \
             --log-level ~{true='INFO' false='WARN' DEBUG} \
             --log-file pbsv.call.log \
             ~{true='--hifi' false='' is_hifi} \
@@ -226,8 +226,8 @@ task Call {
     Int disk_size = 2*ceil(size(svsigs, "GiB") + size([ref_fasta, ref_fasta_fai], "GiB"))
 
     RuntimeAttr default_attr = object {
-        cpu_cores:          16,
-        mem_gb:             64,
+        cpu_cores:          32,
+        mem_gb:             192,
         disk_gb:            disk_size,
         preemptible_tries:  2,
         max_retries:        0,