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Updated pipeline_versions.txt with all pipeline version information
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,40 +1,40 @@ | ||
| Pipeline Name Version Date of Last Commit | ||
| IlluminaGenotypingArray 1.12.24 2024-11-04 | ||
| ExomeReprocessing 3.3.3 2024-11-04 | ||
| CramToUnmappedBams 1.1.3 2024-08-02 | ||
| WholeGenomeReprocessing 3.3.3 2024-11-04 | ||
| ExternalWholeGenomeReprocessing 2.3.3 2024-11-04 | ||
| ExternalExomeReprocessing 3.3.3 2024-11-04 | ||
| CramToUnmappedBams 1.1.3 2024-08-02 | ||
| ExomeReprocessing 3.3.3 2024-11-04 | ||
| GDCWholeGenomeSomaticSingleSample 1.3.4 2024-11-04 | ||
| UltimaGenomicsWholeGenomeCramOnly 1.0.23 2024-11-04 | ||
| WholeGenomeGermlineSingleSample 3.3.3 2024-11-04 | ||
| UltimaGenomicsWholeGenomeGermline 1.1.3 2024-12-05 | ||
| ExomeGermlineSingleSample 3.2.3 2024-11-04 | ||
| JointGenotyping 1.7.2 2024-11-04 | ||
| ReblockGVCF 2.4.0 2024-12-05 | ||
| ExternalWholeGenomeReprocessing 2.3.3 2024-11-04 | ||
| UltimaGenomicsJointGenotyping 1.2.2 2024-11-04 | ||
| JointGenotypingByChromosomePartTwo 1.5.2 2024-11-04 | ||
| ReblockGVCF 2.4.0 2024-12-05 | ||
| JointGenotypingByChromosomePartOne 1.5.2 2024-11-04 | ||
| JointGenotypingByChromosomePartTwo 1.5.2 2024-11-04 | ||
| JointGenotyping 1.7.2 2024-11-04 | ||
| ExomeGermlineSingleSample 3.2.3 2024-11-04 | ||
| WholeGenomeGermlineSingleSample 3.3.3 2024-11-04 | ||
| UltimaGenomicsWholeGenomeGermline 1.1.3 2024-12-05 | ||
| VariantCalling 2.2.4 2024-11-04 | ||
| GDCWholeGenomeSomaticSingleSample 1.3.4 2024-11-04 | ||
| UltimaGenomicsWholeGenomeCramOnly 1.0.23 2024-11-04 | ||
| IlluminaGenotypingArray 1.12.24 2024-11-04 | ||
| AnnotationFiltration 1.2.7 2024-11-04 | ||
| CheckFingerprint 1.0.22 2024-10-28 | ||
| RNAWithUMIsPipeline 1.0.18 2024-11-04 | ||
| BroadInternalUltimaGenomics 1.1.3 2024-12-05 | ||
| BroadInternalRNAWithUMIs 1.0.36 2024-11-04 | ||
| BroadInternalImputation 1.1.14 2024-11-04 | ||
| BroadInternalArrays 1.1.14 2024-11-04 | ||
| ValidateChip 1.16.7 2024-11-04 | ||
| Imputation 1.1.15 2024-11-04 | ||
| MultiSampleArrays 1.6.2 2024-08-02 | ||
| ValidateChip 1.16.7 2024-11-04 | ||
| Arrays 2.6.30 2024-11-04 | ||
| AnnotationFiltration 1.2.7 2024-11-04 | ||
| BroadInternalUltimaGenomics 1.1.3 2024-12-05 | ||
| BroadInternalImputation 1.1.14 2024-11-04 | ||
| BroadInternalArrays 1.1.14 2024-11-04 | ||
| BroadInternalRNAWithUMIs 1.0.36 2024-11-04 | ||
| RNAWithUMIsPipeline 1.0.18 2024-11-04 | ||
| Multiome 5.9.6 2025-01-21 | ||
| snm3C 4.0.4 2024-08-06 | ||
| MultiSampleSmartSeq2SingleNucleus 2.0.7 2025-01-13 | ||
| BuildIndices 4.0.0 2025-01-17 | ||
| SlideSeq 3.4.8 2025-01-13 | ||
| PairedTag 1.10.0 2025-01-21 | ||
| atac 2.6.0 2025-01-21 | ||
| scATAC 1.3.2 2023-08-03 | ||
| BuildIndices 4.0.0 2025-01-17 | ||
| MultiSampleSmartSeq2 2.2.22 2024-09-11 | ||
| snm3C 4.0.4 2024-08-06 | ||
| Optimus 7.9.1 2025-01-13 | ||
| atac 2.6.0 2025-01-21 | ||
| PairedTag 1.10.0 2025-01-21 | ||
| MultiSampleSmartSeq2 2.2.22 2024-09-11 | ||
| SmartSeq2SingleSample 5.1.21 2024-09-11 | ||
| MultiSampleSmartSeq2SingleNucleus 2.0.7 2025-01-13 |