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Add option for requester pays into joint genotyper (import gvcf) #846

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Add option for requester pays into joint genotyper (import gvcf) #846

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ebeaa01
Add option for requestor pays into joint genotyper (import gvcf)
yfarjoun Oct 23, 2022
c6ca4d7
Merge branch 'develop' into yf_add_requester_pays_options
Nov 7, 2022
db4874f
Merge branch 'develop' into yf_add_requester_pays_options
jessicaway Feb 23, 2023
ce49d1c
Merge branch 'develop' into yf_add_requester_pays_options
nikellepetrillo Jun 1, 2023
0001ddc
Merge branch 'develop' into yf_add_requester_pays_options
kevinpalis Jul 13, 2023
2d9c784
Merge branch 'develop' into yf_add_requester_pays_options
nikellepetrillo Jan 9, 2025
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3 changes: 3 additions & 0 deletions tasks/broad/JointGenotypingTasks.wdl
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Expand Up @@ -88,6 +88,8 @@ task ImportGVCFs {
Int disk_size
Int batch_size

String? project_for_requester_pays

String gatk_docker = "us.gcr.io/broad-gatk/gatk:4.2.6.1"
}

Expand All @@ -113,6 +115,7 @@ task ImportGVCFs {
--sample-name-map ~{sample_name_map} \
--reader-threads 5 \
--merge-input-intervals \
~{"--gcs-project-for-requester-pays " + project_for_requester_pays} \
--consolidate

tar -cf ~{workspace_dir_name}.tar ~{workspace_dir_name}
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