Add --overwrite-existing for the rest of test cases

Apperently, the flag does not change anything. But we add it anyway as the tests for "incremental" data upload.
cBioPortal · Mar 21, 2024 · 3191138 · 3191138
1 parent cf22859
commit 3191138
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/src/test/java/org/mskcc/cbio/portal/scripts/incremental/ITIncrementalSamplesImport.java b/src/test/java/org/mskcc/cbio/portal/scripts/incremental/ITIncrementalSamplesImport.java
@@ -92,6 +92,7 @@ public void testInsertNewSampleForExistingPatient() throws DaoException {
         ImportClinicalData importClinicalData = new ImportClinicalData(new String[] {
                 "--meta", metaFile.getAbsolutePath(),
                 "--data", dataFile.getAbsolutePath(),
+                "--overwrite-existing",
         });
         importClinicalData.run();
 
@@ -126,6 +127,7 @@ public void testInsertNewSampleForNonexistentPatient() throws DaoException {
         ImportClinicalData importClinicalData = new ImportClinicalData(new String[] {
                 "--meta", metaFile.getAbsolutePath(),
                 "--data", dataFile.getAbsolutePath(),
+                "--overwrite-existing",
         });
         importClinicalData.run();