cBioPortal · sbabyanusha · Dec 16, 2024
diff --git a/public/pancan_mimsi_msk_2024/case_lists/cases_all.txt b/public/pancan_mimsi_msk_2024/case_lists/cases_all.txt
diff --git a/public/pancan_mimsi_msk_2024/case_lists/cases_cna.txt b/public/pancan_mimsi_msk_2024/case_lists/cases_cna.txt
diff --git a/public/pancan_mimsi_msk_2024/case_lists/cases_cnaseq.txt b/public/pancan_mimsi_msk_2024/case_lists/cases_cnaseq.txt
diff --git a/public/pancan_mimsi_msk_2024/case_lists/cases_sequenced.txt b/public/pancan_mimsi_msk_2024/case_lists/cases_sequenced.txt
diff --git a/public/pancan_mimsi_msk_2024/case_lists/cases_sv.txt b/public/pancan_mimsi_msk_2024/case_lists/cases_sv.txt
diff --git a/public/pancan_mimsi_msk_2024/data_clinical_patient.txt b/public/pancan_mimsi_msk_2024/data_clinical_patient.txt
diff --git a/public/pancan_mimsi_msk_2024/data_clinical_sample.txt b/public/pancan_mimsi_msk_2024/data_clinical_sample.txt
diff --git a/public/pancan_mimsi_msk_2024/data_cna.txt b/public/pancan_mimsi_msk_2024/data_cna.txt
diff --git a/public/pancan_mimsi_msk_2024/data_cna_hg19.seg b/public/pancan_mimsi_msk_2024/data_cna_hg19.seg
diff --git a/public/pancan_mimsi_msk_2024/data_gene_panel_matrix.txt b/public/pancan_mimsi_msk_2024/data_gene_panel_matrix.txt
diff --git a/public/pancan_mimsi_msk_2024/data_mutations.txt b/public/pancan_mimsi_msk_2024/data_mutations.txt
diff --git a/public/pancan_mimsi_msk_2024/data_sv.txt b/public/pancan_mimsi_msk_2024/data_sv.txt
diff --git a/public/pancan_mimsi_msk_2024/meta_clinical_patient.txt b/public/pancan_mimsi_msk_2024/meta_clinical_patient.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: pancan_mimsi_msk_2024
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt
diff --git a/public/pancan_mimsi_msk_2024/meta_clinical_sample.txt b/public/pancan_mimsi_msk_2024/meta_clinical_sample.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: pancan_mimsi_msk_2024
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt
diff --git a/public/pancan_mimsi_msk_2024/meta_cna.txt b/public/pancan_mimsi_msk_2024/meta_cna.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: pancan_mimsi_msk_2024
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+show_profile_in_analysis_tab: true
+profile_name: Copy Number Alterations
+profile_description: Copy number alterations from targeted sequencing via MK-IMPACT, HEME on Illumina HiSeq sequencers.
+datatype: DISCRETE
+data_filename: data_cna.txt
+stable_id: gistic
diff --git a/public/pancan_mimsi_msk_2024/meta_cna_hg19_seg.txt b/public/pancan_mimsi_msk_2024/meta_cna_hg19_seg.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: pancan_mimsi_msk_2024
+data_filename: data_cna_hg19.seg
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: SEG
+show_profile_in_analysis_tab: FALSE
+profile_name: Segment data values
+description: Somatic CNA data (copy number ratio from tumor samples minus ratio from matched normals) from TCGA.
+reference_genome_id: hg19
diff --git a/public/pancan_mimsi_msk_2024/meta_gene_panel_matrix.txt b/public/pancan_mimsi_msk_2024/meta_gene_panel_matrix.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: pancan_mimsi_msk_2024
+data_filename: data_gene_panel_matrix.txt
+genetic_alteration_type: GENE_PANEL_MATRIX
+datatype: GENE_PANEL_MATRIX
diff --git a/public/pancan_mimsi_msk_2024/meta_mutations.txt b/public/pancan_mimsi_msk_2024/meta_mutations.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: pancan_mimsi_msk_2024
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+profile_name: Mutations
+profile_description: Mutation data from MSK-IMPACT, HEME.
+show_profile_in_analysis_tab: true
+data_filename: data_mutations.txt
+stable_id: mutations
diff --git a/public/pancan_mimsi_msk_2024/meta_study.txt b/public/pancan_mimsi_msk_2024/meta_study.txt
@@ -0,0 +1,4 @@
+type_of_cancer: mixed
+cancer_study_identifier: pancan_mimsi_msk_2024
+name: Mixed Tumors - MiMSI Cohort (MSK, 2024)
+description: Targeted sequencing of 5,033 clinical cases and their matched normals via MSK-IMPACT, with pathologist-confirmed orthogonal MMR IHC data <a href="https://doi.org/10.1038/s41467-024-54970-z">DOI.</a>
diff --git a/public/pancan_mimsi_msk_2024/meta_sv.txt b/public/pancan_mimsi_msk_2024/meta_sv.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: pancan_mimsi_msk_2024
+genetic_alteration_type: STRUCTURAL_VARIANT
+datatype: SV
+profile_name: Structural Variants
+profile_description: Structural Variants
+show_profile_in_analysis_tab: true
+data_filename: data_sv.txt
+stable_id: structural_variants