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Calico

Popular repositories Loading

  1. basenji basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    Python 425 127

  2. borzoi borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 126 14

  3. scBasset scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 99 13

  4. solo solo Public

    software to detect doublets

    Python 90 13

  5. scnym scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 74 13

  6. baskerville baskerville Public

    Machine learning methods for DNA sequence analysis.

    Python 37 10

Repositories

Showing 10 of 44 repositories
  • baskerville Public

    Machine learning methods for DNA sequence analysis.

    calico/baskerville’s past year of commit activity
    Python 37 Apache-2.0 10 2 4 Updated Feb 26, 2025
  • CalicoLipidLibrary Public

    In silico Lipid fragmentation patterns

    calico/CalicoLipidLibrary’s past year of commit activity
    Python 0 MIT 0 1 2 Updated Feb 26, 2025
  • do_bwd Public

    Python implementation of extracting body weight dynamics in diversity outbred mice using ARHMM.

    calico/do_bwd’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 25, 2025
  • westminster Public

    Benchmarking baskerville models for regulatory sequence activity prediction

    calico/westminster’s past year of commit activity
    Python 1 Apache-2.0 1 0 3 Updated Feb 5, 2025
  • scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    calico/scBasset’s past year of commit activity
    Jupyter Notebook 99 Apache-2.0 13 4 0 Updated Jan 17, 2025
  • scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    calico/scnym’s past year of commit activity
    Python 74 Apache-2.0 13 7 5 Updated Dec 28, 2024
  • solo Public

    software to detect doublets

    calico/solo’s past year of commit activity
    Python 90 MIT 13 7 1 Updated Dec 28, 2024
  • borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    calico/borzoi’s past year of commit activity
    Python 126 Apache-2.0 14 4 2 Updated Dec 5, 2024
  • borzoi-paper Public

    Analyses related to the Borzoi paper.

    calico/borzoi-paper’s past year of commit activity
    Jupyter Notebook 8 Apache-2.0 1 0 0 Updated Oct 23, 2024
  • romic Public

    romic represents high-dimensional measurements by persistently tracking features, samples, and measurements as a dataset is modified and reformatted. It provides a suite of functions that build on this framework to support data analysis and visualization. These functions are combined into shiny apps tailored to exploratory data analysis.

    calico/romic’s past year of commit activity
    R 5 1 7 0 Updated Sep 25, 2024

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