Try to fix CodeCov report uploads in pytest workflow. (#3827)

* Try to fix CodeCov report uploads in pytest workflow.

* Test additional codecov action options on unit tests.

* Disable all codecov plugins.

* Re-enable docs and integration tests.

.github/workflows/pytest.yml

@@ -223,11 +223,6 @@ jobs:
       - name: List downloaded files
         run: |
           find coverage -type f
-      - name: Upload test coverage report to CodeCov
-        uses: codecov/codecov-action@v4
-        with:
-          directory: coverage
-          token: ${{ secrets.CODECOV_TOKEN }}
       - name: Install Micromamba
         uses: mamba-org/setup-micromamba@v1
         with:
@@ -236,9 +231,20 @@ jobs:
           create-args: >-
             python=3.12
             coverage>=7.6.1
-      - name: Combine coverage data and check that we have required coverage
-        # Required coverage is set in pyproject.toml section [tool.coverage.report]
+      - name: Combine coverage data and output XML report
         run: |
           micromamba run -n coverage coverage combine coverage/*/.coverage
           micromamba run -n coverage coverage xml --fail-under=0
+      - name: Upload XML coverage report to CodeCov
+        uses: codecov/codecov-action@v4
+        with:
+          disable_search: true
+          file: ./coverage.xml
+          token: ${{ secrets.CODECOV_TOKEN }}
+          fail_ci_if_error: true # optional (default = false)
+          plugin: noop
+          verbose: true
+      - name: Display coverage report and ensure it meets required minimum
+        # Required coverage is set in pyproject.toml section [tool.coverage.report]
+        run: |
           micromamba run -n coverage coverage report