rename module to bioformatsimagingextractors

catalystneuro · Jun 1, 2024 · eb33c30 · eb33c30
1 parent 663d4be
commit eb33c30
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Showing 5 changed files with 3 additions and 3 deletions.
diff --git a/src/roiextractors/extractorlist.py b/src/roiextractors/extractorlist.py
@@ -1,6 +1,6 @@
 """Listing of available formats for extraction."""
 
-from .extractors.bioformatsimagingextractor import CxdImagingExtractor
+from .extractors.bioformatsimagingextractors import CxdImagingExtractor
 from .extractors.caiman import CaimanSegmentationExtractor
 from .extractors.hdf5imagingextractor import Hdf5ImagingExtractor
 from .extractors.numpyextractors import (

diff --git a/...rs/bioformatsimagingextractor/__init__.py → ...s/bioformatsimagingextractors/__init__.py b/...rs/bioformatsimagingextractor/__init__.py → ...s/bioformatsimagingextractors/__init__.py
diff --git a/...rmatsimagingextractor/bioformats_utils.py → ...matsimagingextractors/bioformats_utils.py b/...rmatsimagingextractor/bioformats_utils.py → ...matsimagingextractors/bioformats_utils.py
@@ -6,7 +6,7 @@
 from aicsimageio.formats import FORMAT_IMPLEMENTATIONS
 from ome_types import OME
 
-from roiextractors.extraction_tools import PathType
+from ...extraction_tools import PathType
 
 
 def check_file_format_is_supported(file_path: PathType):

diff --git a/...ngextractor/bioformatsimagingextractor.py → ...gextractors/bioformatsimagingextractor.py b/...ngextractor/bioformatsimagingextractor.py → ...gextractors/bioformatsimagingextractor.py
@@ -60,7 +60,7 @@ def __init__(
             Parsed metadata dictionary in the form outputted by parse_ome_metadata in order to be parsed
             correctly.
         """
-        from roiextractors.extractors.bioformatsimagingextractor.bioformats_utils import check_file_format_is_supported
+        from .bioformats_utils import check_file_format_is_supported
         import aicsimageio
 
         self.file_path = file_path

diff --git a/...tsimagingextractor/cxdimagingextractor.py → ...simagingextractors/cxdimagingextractor.py b/...tsimagingextractor/cxdimagingextractor.py → ...simagingextractors/cxdimagingextractor.py