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FILTER_PASS when FILTER has '.' #359

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joshfactorial opened this issue Apr 20, 2021 · 0 comments
Open

FILTER_PASS when FILTER has '.' #359

joshfactorial opened this issue Apr 20, 2021 · 0 comments

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@joshfactorial
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I'm trying to write some vcf parsing code using allel. My problem at the moment is that if the VCF has a '.' instead of a 'PASS', it gets translated into FALSE. Is there a way to see the real column data? Not every VCF will have had filters applied to it, but the current functionality doesn't allow me to check if it was a true fail or just empty.

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