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97 Open 166 Closed
97 Open 166 Closed
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Issues list

KeyError: "Unable to open object (unable to open external file, external link file name = 'xxxxxx.h5')"
#413 opened Jun 14, 2024 by yifangt-ACRD
Question: Is allel.stats.hudson_fst() actually unbiased following Bhatia et al. 2013?
#407 opened Feb 13, 2024 by taprs
1
Fu and Li's D and Fay & Wu's H
#392 opened Mar 9, 2023 by crisamor
reading data chromosome key error
#387 opened Oct 5, 2022 by snowformatics
2
Indexing Error for VariantTable, requires values to be monotonically increasing
#384 opened Jul 23, 2022 by npb596
Behaviour of count_alleles() when all genotypes are missing
#379 opened Apr 13, 2022 by alimanfoo
Copying GenotypeDaskArray returns DaskArray
#377 opened Mar 10, 2022 by travc
allel.read_vcf RuntimeError: VCF file is missing mandatory header line ("#CHROM...")
#376 opened Feb 16, 2022 by nathanvranken
3
Feature Request - unphased IHS/XPEHH
#374 opened Jan 21, 2022 by kullrich
1
error results from allel.pbs
#372 opened Dec 2, 2021 by sandyplus
Haplotype data
#367 opened Aug 25, 2021 by pengyan19
windowing: weird(?) behavior with the last window
#363 opened Jun 25, 2021 by mufernando
4
FILTER_PASS when FILTER has '.'
#359 opened Apr 20, 2021 by joshfactorial
Calculating the sequence diversity between two variants returns a key error
#356 opened Mar 13, 2021 by vsbuffalo
How to use query atrr of array
#355 opened Mar 13, 2021 by KazegamiKuon
Unable to open object (object 'pcontig_000' doesn't exist)
#351 opened Feb 11, 2021 by Ram-Nagar
ALT fields with . + seq in vcf_to_dataframe are annotated as nan.
#349 opened Jan 29, 2021 by gmgs-999
Exporting genotype to a file
#348 opened Jan 27, 2021 by vappiah
3
optional dependency on bcolz
#345 opened Nov 2, 2020 by Anthchirp
1
draw LD heatmap?
#343 opened Oct 22, 2020 by shenweima
Negative GQ values after vcf_to_hdf5
#341 opened Sep 22, 2020 by grlewis333
3
vcf_to_csv -> not recognizing FORMAT
#340 opened Sep 11, 2020 by ayadlin
3
windowed_r_squared: IndexError for single-SNP windows
#337 opened Aug 19, 2020 by pmonnahan
2
Fst input format
#336 opened Aug 19, 2020 by NTNguyen13
1
FORMAT
#331 opened Jul 9, 2020 by javadnoorb
2
ProTip! Exclude everything labeled bug with -label:bug.