harbor-ci #83
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| name: harbor-ci | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "main" | |
| schedule: | |
| # Nightly tests run on main by default: | |
| # Scheduled workflows run on the latest commit on the default or base branch. | |
| # (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule) | |
| - cron: "0 0 * * *" | |
| workflow_dispatch: | |
| concurrency: | |
| group: "${{ github.workflow }}-${{ github.ref }}" | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| test: | |
| name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.10"] | |
| env: | |
| OE_LICENSE: ${{ github.workspace }}/oe_license.txt | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Get Info About Runner | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| # More info on options: https://github.com/mamba-org/provision-with-micromamba | |
| - name: Setup Conda Environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: devtools/environment.yml | |
| environment-name: harbor | |
| cache-environment: true | |
| cache-downloads: true | |
| create-args: >- | |
| python==${{ matrix.python-version }} | |
| - name: Test OE License & Write License to File | |
| env: | |
| OE_LICENSE_TEXT: ${{ secrets.OE_LICENSE }} | |
| run: | | |
| echo "${OE_LICENSE_TEXT}" > ${OE_LICENSE} | |
| python -c "import openeye; assert openeye.oechem.OEChemIsLicensed(), 'OpenEye license checks failed!'" | |
| - name: Install packages | |
| run: | | |
| python -m pip install -e ./ --no-deps | |
| micromamba list | |
| - name: Run tests | |
| env: | |
| CDDTOKEN: ${{ secrets.ASAP_CDD_VAULT_TOKEN_READ_ONLY }} | |
| MOONSHOT_CDD_VAULT_NUMBER: ${{ secrets.MOONSHOT_CDD_VAULT_NUMBER }} | |
| run: | | |
| # run each package test suite; append to coverage file | |
| # Exit immediately if a command exits with a non-zero status. | |
| set -e | |
| pytest -n auto --durations=10 -v --cov-report=xml --cov-report=term --color=yes \ | |
| --cov=harbor \ | |
| harbor/tests | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| slug: choderalab/harbor |