Updates

README.md

@@ -0,0 +1,24 @@
+![Made with Jekyll](https://img.shields.io/badge/Made%20with-Jekyll-1f425f.svg) [![Deploy Jekyll site to Pages](https://github.com/chriskyfung/chriskyfung.github.io/actions/workflows/jekyll-build.yml/badge.svg)](https://github.com/chriskyfung/chriskyfung.github.io/actions/workflows/jekyll-build.yml) [![Website
+ Monitoring](https://img.shields.io/website?down_message=offline&up_message=online&url=https%3A%2F%2Fchriskyfung.github.io%2F)](https://chriskyfung.github.io/)
+
+## 🏡 Chris KY FUNG's GitHub Page
+
+This site is a new version of my old site “Blog of a POLIDA post-grad II .” which was hosting on Wix.com. Now it has been moved to the GitHub page. It should deliver a much faster page loading speed and a nicer display of codes. I hope you will better enjoy my content.
+
+## 🌳 Vision
+
+Computer programming is one important ability necessary for scientific research. It is not only useful in data analytics and simulations, but also helpful to automate and streamline our daily and research tasks.
+
+I hope we share ideas, codes, tips here, and collaborate to make our programming tasks easier soon.
+
+## 💗 Like my stuff?
+
+Would you like to buy me a coffee? I would really appreciate it if you could support me for my R&D projects.
+
+<a href="https://www.buymeacoffee.com/chrisfungky"><img src="https://www.buymeacoffee.com/assets/img/custom_images/orange_img.png" alt="Buy Me A Coffee" style="height: 41px !important;width: 174px !important;box-shadow: 0px 3px 2px 0px rgba(190, 190, 190, 0.5) !important;-webkit-box-shadow: 0px 3px 2px 0px rgba(190, 190, 190, 0.5) !important;" target="_blank"></a>
+
+## ⚖ Copyright
+
+© 2014-2024 Chris KY FUNG. All rights reserved.
+
+<a href="http://www.copyscape.com/"><img src="https://banners.copyscape.com/img/copyscape-banner-white-160x56.png" width="160" height="56" border="0" alt="Protected by Copyscape" title="Protected by Copyscape - Do not copy content from this page." /></a>

about.html

@@ -14,7 +14,7 @@
 <ul class="navbar-btngroup row ml-auto"><li class="nav-item"> <div class="invitation-codes"> <a class="btn invitation-codes-badge" href="https://invitation.codes/@chriskyfung" data-type data-vars-event-label="Invitation Code Button" aria-label="invitation.codes - link opens in a new tab" title="invitation.codes - Open in New Tab" rel="noopener noreferrer" target="_blank"> <svg aria-hidden="true" focusable="false" data-prefix="far" data-icon="comment-alt-dots" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512" style="width:20px"> <path fill="currentColor" d="M448 0H64C28.7 0 0 28.7 0 64v288c0 35.3 28.7 64 64 64h96v84c0 7.1 5.8 12 12 12 2.4 0 4.9-.7 7.1-2.4L304 416h144c35.3 0 64-28.7 64-64V64c0-35.3-28.7-64-64-64zm16 352c0 8.8-7.2 16-16 16H288l-12.8 9.6L208 428v-60H64c-8.8 0-16-7.2-16-16V64c0-8.8 7.2-16 16-16h384c8.8 0 16 7.2 16 16v288zM128 176c-17.7 0-32 14.3-32 32s14.3 32 32 32 32-14.3 32-32-14.3-32-32-32zm128 0c-17.7 0-32 14.3-32 32s14.3 32 32 32 32-14.3 32-32-14.3-32-32-32zm128 0c-17.7 0-32 14.3-32 32s14.3 32 32 32 32-14.3 32-32-14.3-32-32-32z" class=""/> </svg> </a>
 </div> </li><li class="nav-item"> <a class="gh-style btn btn-block" style="margin: 2px 0" aria-label="Sponsor @chriskyfung" target="_top" href="https://github.com/sponsors/chriskyfung?o=esb"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-heart icon-sponsor color-fg-sponsors"> <path fill-rule="evenodd" d="M4.25 2.5c-1.336 0-2.75 1.164-2.75 3 0 2.15 1.58 4.144 3.365 5.682A20.565 20.565 0 008 13.393a20.561 20.561 0 003.135-2.211C12.92 9.644 14.5 7.65 14.5 5.5c0-1.836-1.414-3-2.75-3-1.373 0-2.609.986-3.029 2.456a.75.75 0 01-1.442 0C6.859 3.486 5.623 2.5 4.25 2.5zM8 14.25l-.345.666-.002-.001-.006-.003-.018-.01a7.643 7.643 0 01-.31-.17 22.075 22.075 0 01-3.434-2.414C2.045 10.731 0 8.35 0 5.5 0 2.836 2.086 1 4.25 1 5.797 1 7.153 1.802 8 3.02 8.847 1.802 10.203 1 11.75 1 13.914 1 16 2.836 16 5.5c0 2.85-2.045 5.231-3.885 6.818a22.08 22.08 0 01-3.744 2.584l-.018.01-.006.003h-.002L8 14.25zm0 0l.345.666a.752.752 0 01-.69 0L8 14.25z"/> </svg> <span>Sponsor</span> </a> </li><li class="nav-item"> <button type="button" on="tap:amp-searchbar" id="toggle-search" class="btn btn-primary" data-toggle="modal" data-target="#searchbar" title="search" accesskey="/"> <i class="fas fa-search"></i> </button> </li> </ul> </div>  </div> </nav> <amp-lightbox scrollable id="amp-searchbar" layout="nodisplay" animate-in="fade-in" hidden="hidden" class="i-amphtml-layout-nodisplay" i-amphtml-layout="nodisplay"> <div class="modal-dialog modal-lg">  <div class="modal-content"> <div class="modal-header"> <h5 class="modal-title">Search for</h5> <button class="close" type="button" on="tap:amp-searchbar.close" aria-label="Close Search Modal" tabindex="-1">×</button> </div> <div class="modal-body"> <div class="search_form"> <form method="GET" action="/search" target="_top"> <amp-autocomplete class="searchbox i-amphtml-layout-container" filter="substring" src="/assets/data/suggestions.json" i-amphtml-layout="container"> <input class="form-control" name="q" type="search" placeholder="Search" required> </amp-autocomplete> <input hidden name="sitesearch" value="chriskyfung.github.io"> <button class="btn btn-primary" type="submit">Search</button> </form> </div> </div> </div> </div> </amp-lightbox>   <div class="site-content"> <div class="container">  <div class="main-content" style="margin-top: 88px;"> <main class="col-md-8 col-lg-8"> <h1 class="posttitle">About</h1> <div class="article-post"> <div class="row post-top-meta"> <div class="col-md-2"> <amp-img class="author-thumb i-amphtml-layout-fixed i-amphtml-layout-size-defined" src="https://www.gravatar.com/avatar/abd876486b2caa54b43bf64a5a86f620?s=250&amp;d=mm&amp;r=x" width="72" height="72" alt style="width:72px;height:72px;" i-amphtml-layout="fixed"></amp-img> </div> <div class="col-md-10"> <a target="_blank" class="link-dark" href="https://en.gravatar.com/chrisfungky"></a><a target="_blank" href="https://www.facebook.com/chriskyfung/" class="btn follow">Follow</a> <span class="author-description">Author of this blog, M.Phil.</span> </div>
 </div> <p>Hi, my name is Chris KY FUNG, an individual researcher in Engineering living in Hong Kong. Well, I am not a proficient programmer, but I frequently code for my engineering research projects. I mainly used MATLAB when I was studying my MPhil in Computational Intelligence. After graduated, I had participated research on atomistic simulation of material processing with molecular dynamics (MD) for six years. To conduct such huge simulations, I had to deal and play with Linux servers and High-Performance Computing (HPC). My job also included developing models and data analysis with various programming languages.</p> <p>Being the exploration of molecular dynamics simulations, I am lucky to touch and use the high-performance computing (HPC) facilities in our university. I believe that HPC will be an essential weapon for various areas, including research, finance, business, etc. Thanks for the efforts of many researchers who developed the codes and tools, which make us more easily analyze and/or simulate the experimental data. I wish I will be able to deliver my research outputs and contribute to the successive development in HPC applications for science too.</p> <p>The research experience lets me know that programming and computer skills become increasingly important for a wide variety of student and research projects. Many students and researchers are, however, lack of a strong background in computer programming. The computer issues kill a lot of their time and energy, when they have to review papers, conduct experiments, and writing reports and theses. This GitHub Page is to share my programming and computer skills as well as research experience for solving their headaches.</p> <p><br></p> <p><i class="fa fa-id-card-o"></i> <strong>Public Profiles:</strong></p> <ul> <li><i class="fa fa-graduation-cap"></i> <a href="https://scholar.google.com.hk/citations?user=UxJpoYcAAAAJ"><strong>Google Scholar</strong></a></li> <li><i class="fas fa-flask"></i> <a href="https://www.qwiklabs.com/public_profiles/c2765684-379a-4aa7-89bc-0182cc5a01be"><strong>Qwiklabs</strong></a></li> <li><i class="fab fa-microsoft"></i> <a href="https://docs.microsoft.com/en-us/users/chriskyfung/"><strong>Microsoft Learn</strong></a></li>
-</ul> <hr> <p>I am also a maker and the founder of a local community, called <a href="https://craftweeks.com/en/">Craftweeks</a>. You may also visit craftweeks.com and <a href="https://www.youtube.com/channel/UCGlT2itihZuRxMckNcfcA3A">the YouTube channel</a>, if you’re interested in designing and making things.</p> <h2 id="vision">Vision</h2> <p>Computer programming is one important ability necessary for scientific research. It is not only useful in data analytics and simulations, but also helpful to automate and streamline our daily and research tasks.</p> <p>I hope all of us can share ideas, codes, tips here, and collaborate to make our programming tasks easier soon.</p> </div></main> <amp-analytics type="gtag" data-credentials="include" class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:1px;height:1px;" i-amphtml-layout="fixed"> <script type="application/json">{"vars":{"gtag_id":"G-HP4LN87NJE","config":{"G-HP4LN87NJE":{"groups":"default"}}},"triggers":{"trackAnchorClicks":{"on":"click","selector":"a:not([href^='https://chriskyfung.github.io'])","vars":{"event_name":"outgoing_click","method":"Google","link_url":"${eventLabel}","outbound":true}}}}</script>
+</ul> <hr> <p>I am also a maker and the founder of a local community, called <a href="https://craftweeks.com/en/">Craftweeks</a>. You may also visit craftweeks.com and <a href="https://www.youtube.com/channel/UCGlT2itihZuRxMckNcfcA3A">the YouTube channel</a>, if you’re interested in designing and making things.</p> <h2 id="vision">Vision</h2> <p>Computer programming is one important ability necessary for scientific research. It is not only useful in data analytics and simulations, but also helpful to automate and streamline our daily and research tasks.</p> <p>I hope all of us can share ideas, codes, tips here, and collaborate to make our programming tasks easier soon.</p> </div></main> <amp-analytics type="gtag" data-credentials="include" class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:1px;height:1px;" i-amphtml-layout="fixed"> <script type="application/json">{"vars":{"gtag_id":"G-HP4LN87NJE","config":{"G-HP4LN87NJE":{"groups":"default"}},"debug_mode":true,"ampHost":"${ampdocHost}"},"triggers":{"trackAnchorClicks":{"on":"click","selector":"a:not([href^='https://chriskyfung.github.io'])","vars":{"event_name":"outgoing_click","method":"Google","link_url":"${eventLabel}","outbound":true}}}}</script>
 </amp-analytics> </div> </div> <footer> <h2 class="sr-only">Footer</h2>  <section class="beforefooter"> <div class="container"> <div class="row justify-content-center"> <div class="col-md-8 mt-3"> <h3>Want to talk about a new or existing project?</h3>
 <p>See anything that can be improved?</p>
 <p>Feel free to send me a message using the form below. I will get back to you as soon as possible!</p>

blog/2014/06/13/How-to-Send-a-Notification-from-a-LAMMPS-Simulation-to-Your-Email.html

@@ -36,7 +36,7 @@
 </div> </section> </div><div class="sidebar-section"> <h3><span aria-label="useful links">Useful</span><span class="sr-only"> Links</span></h3> <ul> <li><a href="/about">About Me</a></li> <li><a href="/#projects">My Projects</a></li> <li><a href="/contact">Partner with Me</a></li> <li><a href="https://invitation.codes/@chriskyfung" data-type="badge1" rel="noopener noreferrer" target="_blank">Use my referral codes</a></li> </ul>
 </div>
 <div class="sidebar-section"> <h3><span>Ads</span></h3> <amp-ad width="100vw" height="292" data-block-on-consent-purposes="advertising" type="adsense" data-ad-client="ca-pub-4819282024314540" data-ad-slot="1391498756" data-auto-format="rspv" data-adtest="on" data-full-width class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:100vw;height:292px;" i-amphtml-layout="fixed"> <div overflow></div> <div placeholder>Loading ...</div> <div fallback>No ad for you</div> </amp-ad></div>
-</div></div></div>  <amp-analytics type="gtag" data-credentials="include" class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:1px;height:1px;" i-amphtml-layout="fixed"> <script type="application/json">{"vars":{"gtag_id":"G-HP4LN87NJE","config":{"G-HP4LN87NJE":{"groups":"default"}}},"triggers":{"trackAnchorClicks":{"on":"click","selector":"a:not([href^='https://chriskyfung.github.io'])","vars":{"event_name":"outgoing_click","method":"Google","link_url":"${eventLabel}","outbound":true}}}}</script>
+</div></div></div>  <amp-analytics type="gtag" data-credentials="include" class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:1px;height:1px;" i-amphtml-layout="fixed"> <script type="application/json">{"vars":{"gtag_id":"G-HP4LN87NJE","config":{"G-HP4LN87NJE":{"groups":"default"}},"debug_mode":true,"ampHost":"${ampdocHost}"},"triggers":{"trackAnchorClicks":{"on":"click","selector":"a:not([href^='https://chriskyfung.github.io'])","vars":{"event_name":"outgoing_click","method":"Google","link_url":"${eventLabel}","outbound":true}}}}</script>
 </amp-analytics> </div> </div> <footer> <h2 class="sr-only">Footer</h2>  <section class="beforefooter"> <div class="container"> <div class="row justify-content-center"> <div class="col-md-8 mt-3"> <h3>Want to talk about a new or existing project?</h3>
 <p>See anything that can be improved?</p>
 <p>Feel free to send me a message using the form below. I will get back to you as soon as possible!</p>

blog/2014/07/04/Creating-an-array-of-SJR-widget-for-visual-comparison-of-journal-ranks.html

@@ -32,7 +32,7 @@
 </div> </section> </div><div class="sidebar-section"> <h3><span aria-label="useful links">Useful</span><span class="sr-only"> Links</span></h3> <ul> <li><a href="/about">About Me</a></li> <li><a href="/#projects">My Projects</a></li> <li><a href="/contact">Partner with Me</a></li> <li><a href="https://invitation.codes/@chriskyfung" data-type="badge1" rel="noopener noreferrer" target="_blank">Use my referral codes</a></li> </ul>
 </div>
 <div class="sidebar-section"> <h3><span>Ads</span></h3> <amp-ad width="100vw" height="292" data-block-on-consent-purposes="advertising" type="adsense" data-ad-client="ca-pub-4819282024314540" data-ad-slot="1391498756" data-auto-format="rspv" data-adtest="on" data-full-width class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:100vw;height:292px;" i-amphtml-layout="fixed"> <div overflow></div> <div placeholder>Loading ...</div> <div fallback>No ad for you</div> </amp-ad></div>
-</div></div></div>  <amp-analytics type="gtag" data-credentials="include" class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:1px;height:1px;" i-amphtml-layout="fixed"> <script type="application/json">{"vars":{"gtag_id":"G-HP4LN87NJE","config":{"G-HP4LN87NJE":{"groups":"default"}}},"triggers":{"trackAnchorClicks":{"on":"click","selector":"a:not([href^='https://chriskyfung.github.io'])","vars":{"event_name":"outgoing_click","method":"Google","link_url":"${eventLabel}","outbound":true}}}}</script>
+</div></div></div>  <amp-analytics type="gtag" data-credentials="include" class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:1px;height:1px;" i-amphtml-layout="fixed"> <script type="application/json">{"vars":{"gtag_id":"G-HP4LN87NJE","config":{"G-HP4LN87NJE":{"groups":"default"}},"debug_mode":true,"ampHost":"${ampdocHost}"},"triggers":{"trackAnchorClicks":{"on":"click","selector":"a:not([href^='https://chriskyfung.github.io'])","vars":{"event_name":"outgoing_click","method":"Google","link_url":"${eventLabel}","outbound":true}}}}</script>
 </amp-analytics> </div> </div> <footer> <h2 class="sr-only">Footer</h2>  <section class="beforefooter"> <div class="container"> <div class="row justify-content-center"> <div class="col-md-8 mt-3"> <h3>Want to talk about a new or existing project?</h3>
 <p>See anything that can be improved?</p>
 <p>Feel free to send me a message using the form below. I will get back to you as soon as possible!</p>

blog/2014/07/12/Tip-for-scripting-LAMMPS-Create-And-Rename-A-Folder-Based-On-The-Input-Variables.html

@@ -60,7 +60,7 @@
 </div> </section> </div><div class="sidebar-section"> <h3><span aria-label="useful links">Useful</span><span class="sr-only"> Links</span></h3> <ul> <li><a href="/about">About Me</a></li> <li><a href="/#projects">My Projects</a></li> <li><a href="/contact">Partner with Me</a></li> <li><a href="https://invitation.codes/@chriskyfung" data-type="badge1" rel="noopener noreferrer" target="_blank">Use my referral codes</a></li> </ul>
 </div>
 <div class="sidebar-section"> <h3><span>Ads</span></h3> <amp-ad width="100vw" height="292" data-block-on-consent-purposes="advertising" type="adsense" data-ad-client="ca-pub-4819282024314540" data-ad-slot="1391498756" data-auto-format="rspv" data-adtest="on" data-full-width class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:100vw;height:292px;" i-amphtml-layout="fixed"> <div overflow></div> <div placeholder>Loading ...</div> <div fallback>No ad for you</div> </amp-ad></div>
-</div></div></div>  <amp-analytics type="gtag" data-credentials="include" class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:1px;height:1px;" i-amphtml-layout="fixed"> <script type="application/json">{"vars":{"gtag_id":"G-HP4LN87NJE","config":{"G-HP4LN87NJE":{"groups":"default"}}},"triggers":{"trackAnchorClicks":{"on":"click","selector":"a:not([href^='https://chriskyfung.github.io'])","vars":{"event_name":"outgoing_click","method":"Google","link_url":"${eventLabel}","outbound":true}}}}</script>
+</div></div></div>  <amp-analytics type="gtag" data-credentials="include" class="i-amphtml-layout-fixed i-amphtml-layout-size-defined" style="width:1px;height:1px;" i-amphtml-layout="fixed"> <script type="application/json">{"vars":{"gtag_id":"G-HP4LN87NJE","config":{"G-HP4LN87NJE":{"groups":"default"}},"debug_mode":true,"ampHost":"${ampdocHost}"},"triggers":{"trackAnchorClicks":{"on":"click","selector":"a:not([href^='https://chriskyfung.github.io'])","vars":{"event_name":"outgoing_click","method":"Google","link_url":"${eventLabel}","outbound":true}}}}</script>
 </amp-analytics> </div> </div> <footer> <h2 class="sr-only">Footer</h2>  <section class="beforefooter"> <div class="container"> <div class="row justify-content-center"> <div class="col-md-8 mt-3"> <h3>Want to talk about a new or existing project?</h3>
 <p>See anything that can be improved?</p>
 <p>Feel free to send me a message using the form below. I will get back to you as soon as possible!</p>