incorporate more rad-source logic #3
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Fixed windows not running bug
Update gitignore to exclude local files and settings
Removed Semantic Clone Detector python script and update gitignore If you are using eclipse I have removed the files specific to eclipse projects, let me know if this causes issues.
Git Clone Logic
updated run args, start of clone file deletion
Remaining instances of codeclone removed
remove reintroduced clone function, verified everything works
Updated error handling, modified documentation, updated readme
additional documentation
Enable pretty printing for gson, output files now formatted
intermediate extraction code (big update)
fix delta extraction for additions/deletions/renames
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