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singleCellTK release v2.7.2
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@mvfki mvfki released this 23 Oct 15:40
· 570 commits to master since this release
v2.7.2
a76fffb
  • Deprecated findMarkerDiffExp(), findMarkerTopTable() and plotMarkerDiffExp(), which are replaced by runFindMarker(), getFindMarkerTopTable() and plotFindMarkerHeatmap(), respectively
  • Added useReducedDim, detectThresh arguments for find marker functions
  • Deprecated getUMAP() and getTSNE(), which are replaced by runUMAP() and runTSNE(), respectively
  • Added runQuickUMAP() and runQuickTSNE() functions which directly compute the proper embedding from raw counts matrices with a simplified argument set
  • Added arguments aggregateRow and aggregateCol to plotSCEHeatmap()
  • Updated output metadata structure of QC functions, as well as combineSCE() which merges the new structure properly
  • Refined batch correction function set
  • Fixed bugs related to UI and console functions
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