Updated revision2

revision2.tex

@@ -639,20 +639,22 @@ \section*{Code availability}
 All crisprVerse packages are open-source and available on GitHub (Table~\ref{tab:software}).
 At time of publication, all packages were accepted at Bioconductor and available on the development branch of Bioconductor.
 Because of its size, the data package \textit{crisprDesignData} is hosted on GitHub only. 
-Reproducible code of all analyses can be found at \url{https://github.com/crisprVerse/crisprVersePaper}.
-A list of extensive tutorials can be found at \url{https://github.com/crisprVerse/Tutorials}.
+Reproducible code of all analyses can be found at \url{https://github.com/crisprVerse/crisprVersePaper} and are archived on Zenodo \fixme{fixme}.
+A list of extensive tutorials can be found at \url{https://github.com/crisprVerse/Tutorials} and are archived on Zenodo (\url{https://doi.org/10.5281/zenodo.7212557}).
 
 The analyses included in this paper were produced using the following package versions: 
-\textit{crisprDesign} (v0.99.134),
-\textit{crisprScore} (v1.1.14), 
-\textit{crisprScoreData} (v1.1.3), 
-\textit{crisprBowtie} (v1.1.1),
-\textit{crisprBase} v(1.1.5),
-\textit{crisprVerse} v(0.99.8),
-\textit{crisprBwa} (v1.1.3), 
-\textit{Rbwa} (v1.1.0),
-\textit{crisprDesignData} (0.99.17),
-\textit{crisprViz} (0.99.18)
+\begin{itemize}
+\item \textit{crisprDesign} (v0.99.178, \url{https://doi.org/10.5281/zenodo.7217534})
+\item \textit{crisprScore} (v1.1.17, \url{https://doi.org/10.5281/zenodo.7217539})
+\item \textit{crisprScoreData} (v1.1.4), \url{https://doi.org/10.5281/zenodo.7212547})
+\item \textit{crisprBowtie} (v1.1.2, \url{https://doi.org/10.5281/zenodo.7217536})
+\item \textit{crisprBase} (v1.1.8, \url{https://doi.org/10.5281/zenodo.7217535})
+\item \textit{crisprVerse} (v0.99.11, \url{https://doi.org/10.5281/zenodo.7217532})
+\item \textit{crisprBwa} (v1.1.5, \url{https://doi.org/10.5281/zenodo.7217555})
+\item \textit{Rbwa} (v1.1.1, \url{https://doi.org/10.5281/zenodo.7212545})
+\item \textit{crisprDesignData} (v0.99.24, \url{https://doi.org/10.5281/zenodo.7212549})
+\item \textit{crisprViz} (v0.99.23, \url{https://doi.org/10.5281/zenodo.7217540}
+\end{itemize}
 
 We also offer a Docker container encapsulating the latest crisprVerse ecosystem on our \href{https://hub.docker.com/repository/docker/fortin946/crisprverse}{DockerHub page}.
 Documentation about the installation and usage of the container can be found \href{https://github.com/crisprVerse/Docker}{here}.
@@ -663,6 +665,9 @@ \section*{Code availability}
 
 
 
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