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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,41 +1,45 @@ | ||
| Node: E:chemicals->E1 | ||
| typeOf: dcs:AnatomicalTherapeuticChemicalCode | ||
| dcid: C:chemicals->ATC | ||
| dcid: C:chemicals->atcCodes | ||
|
|
||
| Node: E:chemicals->E2 | ||
| typeOf: dcs:MeSHConcept | ||
| dcid: C:chemicals->MeSH | ||
| dcid: C:chemicals->dcid_MeSHConcept | ||
|
|
||
| Node: E:chemicals->E3 | ||
| typeOf: schema:Drug | ||
| typeOf: dcs:MeSHDescriptor | ||
| dcid: C:chemicals->dcid_MeSHDescriptor | ||
|
|
||
| Node: E:chemicals->E4 | ||
| typeOf: dcs:ChemicalCompound | ||
| dcid: C:chemicals->dcid | ||
| name: C:chemicals->Name | ||
| atcCode: E:chemicals->E1 | ||
| bindingDBID: C:chemicals->BindingDB | ||
| chebiID: C:chemicals->ChEBI | ||
| chemblID: C:chemicals->ChEMBL | ||
| chemicalAbstractServiceID: C:chemicals->CAS | ||
| clinicalAnnotationCount: C:chemicals->Clinical Annotation Count | ||
| clinicalAnnotationCount: C:chemicals->clinicalAnnotationCount | ||
| drugBankID: C:chemicals->DrugBank | ||
| drugBankMetaboliteID: C:chemicals->DrugBank Metabolite | ||
| drugBankMetaboliteID: C:chemicals->drugBankMetabolite | ||
| drugBrandMixture: C:chemicals->brandMixture | ||
| drugGenericName: C:chemicals->genericName | ||
| drugTradeName: C:chemicals->tradeName | ||
| drugType: C:chemicals->Type | ||
| geneticVariantAnnotationCount: C:chemicals->Variant Annotation Count | ||
| geneticVariantAnnotationCount: C:chemicals->variantAnnotationCount | ||
| humanMetabolomeDatabaseID: C:chemicals->HMDB | ||
| inChIKey: C:chemicals->InChI | ||
| medicalSubjectHeadingID: E:chemicals->E2 | ||
| medicalSubjectHeadingID: E:chemicals->E3 | ||
| medicalDictionaryForRegulatoryActivitiesId: C:chemicals->MedDRA | ||
| metabolicPathwayCount: C:chemicals->Pathway Count | ||
| metabolicPathwayCount: C:chemicals->pathwayCount | ||
| nationalClinicalTrialNumber: C:chemicals->ClinicalTrials.gov | ||
| nationalDrugFileReferenceTerminologyCode: C:chemicals->NDF-RT | ||
| pharmGKBID: C:chemicals->pharmGKBID | ||
| pubChemCompoundID: C:chemicals->PubChem Compound | ||
| pubChemCompoundID: C:chemicals->PubChem Compound Identifiers | ||
| pubChemSubstanceID: C:chemicals->PubChem Substance | ||
| rxConceptUniqueId: C:chemicals->RxNorm Identifiers | ||
| pubChemCompoundID: C:chemicals->pubChemCID | ||
| pubChemSubstanceID: C:chemicals->pubChemSubstance | ||
| rxConceptUniqueId: C:chemicals->rxNormID | ||
| simplifiedMolecularInputLineEntrySystem: C:chemicals->SMILES | ||
| topClinicalAnnotationLevel: C:chemicals->Top Clinical Annotation Level | ||
| topClinicalAnnotationLevel: C:chemicals->topClinicalAnnotationLevel | ||
| url: C:chemicals->URL | ||
| veryImportantPharmacogeneCount: C:chemicals->VIP Count | ||
| veryImportantPharmacogeneCount: C:chemicals->vipCount |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,13 @@ | ||
| Node: E:phenotypes->E1 | ||
| typeOf: dcs:MeSHDescriptor | ||
| dcid: C:phenotypes->MeSHDcid | ||
| nationalDrugFileReferenceTerminologyCode: C:phenotypes->NDFRT | ||
| dcid: C:phenotypes->dcid_mesh | ||
| name: C:phenotypes->Name | ||
| medicalDictionaryForRegulatoryActivitiesId: C:phenotypes->MedDRA | ||
| medicalSubjectHeadingID: C:phenotypes->MeSH | ||
| mondoID: C:phenotypes->MONDO | ||
| nationalDrugFileReferenceTerminologyCode: C:phenotypes->NDFRT | ||
| pharmGKBID: C:phenotypes->pharmGKBID | ||
| snomedCT: C:phenotypes->SnoMedCT | ||
| synonym: C:phenotypes->synonyms | ||
| umlsConceptUniqueID: C:phenotypes->UMLS | ||
| url: C:phenotypes->URL |
13 changes: 13 additions & 0 deletions
13
scripts/biomedical/PharmGKB/tMCFs/phenotypes_mesh_qualifier.tmcf
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,13 @@ | ||
| Node: E:phenotypes_mesh_qualifier->E1 | ||
| typeOf: dcs:MeSHDescriptor | ||
| dcid: C:phenotypes_mesh_qualifier->dcid_mesh | ||
| name: C:phenotypes_mesh_qualifier->Name | ||
| medicalDictionaryForRegulatoryActivitiesId: C:phenotypes_mesh_qualifier->MedDRA | ||
| medicalSubjectHeadingID: C:phenotypes_mesh_qualifier->MeSH | ||
| mondoID: C:phenotypes_mesh_qualifier->MONDO | ||
| nationalDrugFileReferenceTerminologyCode: C:phenotypes_mesh_qualifier->NDFRT | ||
| pharmGKBID: C:phenotypes_mesh_qualifier->pharmGKBID | ||
| snomedCT: C:phenotypes_mesh_qualifier->SnoMedCT | ||
| synonym: C:phenotypes_mesh_qualifier->synonyms | ||
| umlsConceptUniqueID: C:phenotypes_mesh_qualifier->UMLS | ||
| url: C:phenotypes_mesh_qualifier->URL |
13 changes: 13 additions & 0 deletions
13
scripts/biomedical/PharmGKB/tMCFs/phenotypes_mesh_supplementary_concept_record.tmcf
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,13 @@ | ||
| Node: E:phenotypes_mesh_supplementary_concept_record->E1 | ||
| typeOf: dcs:MeSHDescriptor | ||
| dcid: C:phenotypes_mesh_supplementary_concept_record->dcid_mesh | ||
| name: C:phenotypes_mesh_supplementary_concept_record->Name | ||
| medicalDictionaryForRegulatoryActivitiesId: C:phenotypes_mesh_supplementary_concept_record->MedDRA | ||
| medicalSubjectHeadingID: C:phenotypes_mesh_supplementary_concept_record->MeSH | ||
| mondoID: C:phenotypes_mesh_supplementary_concept_record->MONDO | ||
| nationalDrugFileReferenceTerminologyCode: C:phenotypes_mesh_supplementary_concept_record->NDFRT | ||
| pharmGKBID: C:phenotypes_mesh_supplementary_concept_record->pharmGKBID | ||
| snomedCT: C:phenotypes_mesh_supplementary_concept_record->SnoMedCT | ||
| synonym: C:phenotypes_mesh_supplementary_concept_record->synonyms | ||
| umlsConceptUniqueID: C:phenotypes_mesh_supplementary_concept_record->UMLS | ||
| url: C:phenotypes_mesh_supplementary_concept_record->URL |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,6 +1,19 @@ | ||
| Node: E:variants->E1 | ||
| typeOf: dcs:Gene | ||
| dcid: C:variants->dcid_gene | ||
| name: C:variants->geneSymbols | ||
| pharmGKBID: C:variants->geneID | ||
|
|
||
| Node: E:variants->E2 | ||
| typeOf: dcs:GeneticVariant | ||
| dcid: C:variants->dcid | ||
| name: C:variants->Variant Name | ||
| pharmGKBID: C:variants->Variant ID | ||
| rsID: C:variants->Variant ID | ||
| name: C:variants->rsID | ||
| clinicalAnnotationCount: C:variants->clinicalAnnotationCount | ||
| clinicalAnnotationCountLevel1_2: C:variants->clinicalAnnotationCountLevel1_2 | ||
| clinicalGuidelineAnnotationCount: C:variants->guidelineAnnotationCount | ||
| drugLabelAnnotationCount: C:variants->labelAnnotationCount | ||
| geneSymbol: E:variants->E1 | ||
| geneticVariantAnnotationCount: C:variants->variantAnnotationCount | ||
| pharmGKBID: C:variants->pharmGKBID | ||
| rsID: C:variants->rsID | ||
| synonym: C:variants->Synonyms |