Pin transformers to 4.45.2 (#4689)

Also updates nl goldens
datacommonsorg · Oct 24, 2024 · 4fbd786 · 4fbd786
1 parent c073189
commit 4fbd786
Show file tree

Hide file tree

Showing 8 changed files with 302 additions and 301 deletions.
diff --git a/nl_requirements.txt b/nl_requirements.txt
@@ -12,4 +12,5 @@ torchvision==0.17.2
 # TODO: this is pinned because latest huggingface_hub is not compatible with
 # sentence-transformers v2.2.2. Look into upgrading sentence-transformers to
 # v2.3.0 or newer
-huggingface_hub==0.25.2
+huggingface_hub==0.25.2
+transformers==4.45.2
diff --git a/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json b/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json
@@ -10,29 +10,29 @@
   "query_with_places_removed": "what is the phylum of",
   "sv_matching": {
     "CosineScore": [
-      0.35510891675949097,
-      0.34608712792396545,
-      0.34525778889656067,
-      0.34484589099884033,
-      0.3411365747451782,
-      0.3384982645511627,
-      0.3349902927875519,
-      0.33166080713272095,
-      0.32600581645965576,
-      0.32424452900886536,
-      0.32060614228248596,
-      0.3142656087875366,
-      0.31276530027389526,
-      0.3126294016838074,
-      0.31250450015068054,
+      0.35510897636413574,
+      0.3460872769355774,
+      0.3452577292919159,
+      0.344845712184906,
+      0.34113651514053345,
+      0.3384983241558075,
+      0.3349902033805847,
+      0.3316609561443329,
+      0.3260059356689453,
+      0.32424432039260864,
+      0.3206062316894531,
+      0.31426557898521423,
+      0.3127653896808624,
+      0.31262922286987305,
+      0.31250447034835815,
       0.31177398562431335,
-      0.31033891439437866,
-      0.3100748062133789,
-      0.3098834156990051,
-      0.30805402994155884,
-      0.3074587285518646,
+      0.31033921241760254,
+      0.31007489562034607,
+      0.30988338589668274,
+      0.3080539405345917,
+      0.30745869874954224,
       0.30719631910324097,
-      0.3039420545101166
+      0.3039420247077942
     ],
     "MultiSV": {},
     "Query": "what is the phylum of",
@@ -64,34 +64,34 @@
   },
   "props_matching": {
     "CosineScore": [
-      1.0000001192092896,
-      0.47528403997421265,
-      0.3615415692329407,
-      0.3420097827911377,
-      0.32933083176612854,
-      0.3184516429901123,
-      0.3146698474884033,
-      0.3083950877189636,
-      0.30794060230255127,
-      0.3046301305294037,
-      0.2827085256576538,
-      0.2818753123283386,
-      0.28082767128944397,
-      0.28045278787612915,
-      0.2742983102798462,
-      0.2715049386024475,
-      0.27071818709373474,
-      0.2695465385913849,
-      0.25990062952041626,
-      0.25990062952041626,
-      0.24827902019023895,
-      0.24662014842033386,
-      0.24632105231285095,
-      0.24616341292858124,
-      0.24212220311164856,
-      0.23135532438755035,
-      0.2296244204044342,
-      0.2277354896068573
+      0.9999998807907104,
+      0.4752839505672455,
+      0.36154165863990784,
+      0.34200993180274963,
+      0.3293309211730957,
+      0.31845176219940186,
+      0.31466981768608093,
+      0.3083951473236084,
+      0.3079407513141632,
+      0.30463001132011414,
+      0.28270864486694336,
+      0.28187549114227295,
+      0.2808278203010559,
+      0.2804529666900635,
+      0.27429836988449097,
+      0.27150505781173706,
+      0.2707182466983795,
+      0.26954683661460876,
+      0.2599008083343506,
+      0.2599008083343506,
+      0.24827907979488373,
+      0.24662044644355774,
+      0.24632112681865692,
+      0.24616354703903198,
+      0.24212250113487244,
+      0.23135541379451752,
+      0.2296244502067566,
+      0.22773587703704834
     ],
     "PROP": [
       "phylum",

diff --git a/...n_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json b/...n_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json
@@ -12,30 +12,30 @@
   "query_with_places_removed": "what types of genes are and",
   "sv_matching": {
     "CosineScore": [
-      0.5237791538238525,
-      0.4451894164085388,
-      0.41981467604637146,
-      0.41922128200531006,
-      0.4136667847633362,
-      0.4096526503562927,
-      0.40661105513572693,
-      0.4013715982437134,
-      0.4010191261768341,
-      0.400637686252594,
-      0.39874640107154846,
-      0.39836061000823975,
-      0.39052367210388184,
-      0.3890332579612732,
-      0.38846099376678467,
-      0.3883823752403259,
-      0.3873301148414612,
-      0.38642191886901855,
-      0.3858962655067444,
-      0.3856789469718933,
-      0.38543426990509033,
-      0.38533884286880493,
-      0.3818426728248596,
-      0.37970495223999023
+      0.5237788558006287,
+      0.44518929719924927,
+      0.4198145568370819,
+      0.41922125220298767,
+      0.4136667251586914,
+      0.4096524715423584,
+      0.4066111147403717,
+      0.40137141942977905,
+      0.40101921558380127,
+      0.40063756704330444,
+      0.3987462520599365,
+      0.3983607292175293,
+      0.39052334427833557,
+      0.3890331983566284,
+      0.38846108317375183,
+      0.3883824050426483,
+      0.3873300850391388,
+      0.3864220678806305,
+      0.38589635491371155,
+      0.385678768157959,
+      0.3854341208934784,
+      0.38533875346183777,
+      0.3818424642086029,
+      0.37970471382141113
     ],
     "MultiSV": {},
     "Query": "what types of genes are and",
@@ -68,29 +68,29 @@
   },
   "props_matching": {
     "CosineScore": [
-      0.908610999584198,
-      0.7445293664932251,
-      0.7330226898193359,
-      0.7175887823104858,
-      0.6834691166877747,
-      0.6590197086334229,
-      0.6340402960777283,
-      0.5988124012947083,
+      0.9086108803749084,
+      0.7445291876792908,
+      0.7330227494239807,
+      0.7175889611244202,
+      0.6834693551063538,
+      0.6590196490287781,
+      0.6340398192405701,
+      0.5988121628761292,
       0.595878541469574,
-      0.5850145220756531,
-      0.5810791850090027,
+      0.5850147604942322,
+      0.5810789465904236,
       0.5432419776916504,
       0.5399730205535889,
       0.5320467948913574,
       0.5309585928916931,
-      0.5142703056335449,
-      0.5125278234481812,
-      0.46105992794036865,
-      0.44410809874534607,
-      0.3982294797897339,
-      0.3944428563117981,
-      0.392289936542511,
-      0.38480231165885925
+      0.5142701268196106,
+      0.5125278830528259,
+      0.4610598683357239,
+      0.4441079795360565,
+      0.3982292413711548,
+      0.3944430947303772,
+      0.3922898471355438,
+      0.38480237126350403
     ],
     "PROP": [
       "typeOfGene",

diff --git a/...est_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json b/...est_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json
@@ -8,43 +8,43 @@
   "query_with_places_removed": "compare male population with female population",
   "sv_matching": {
     "CosineScore": [
-      0.9187595844268799,
-      0.8590543866157532,
+      0.9187589883804321,
+      0.8590542674064636,
       0.8354092836380005,
-      0.7823134660720825,
-      0.7773187756538391,
+      0.7823135852813721,
+      0.7773193120956421,
       0.7762894630432129,
       0.7663271427154541,
-      0.766107439994812,
-      0.7614184617996216,
-      0.7606041431427002,
-      0.7595797181129456,
-      0.7573733329772949,
-      0.7573024034500122,
-      0.757297158241272,
-      0.7553009390830994,
-      0.7533451318740845,
-      0.7532937526702881,
-      0.7509560585021973,
-      0.7482578754425049,
-      0.7451456785202026,
-      0.7443947792053223,
-      0.7431552410125732,
-      0.7426693439483643,
-      0.7396597862243652,
-      0.7371534109115601,
-      0.7366002798080444,
-      0.7347153425216675,
-      0.733651876449585,
-      0.732607901096344,
-      0.7325160503387451,
-      0.7302997708320618,
-      0.7299268841743469,
+      0.7661072611808777,
+      0.7614185810089111,
+      0.7606043219566345,
+      0.7595799565315247,
+      0.7573726773262024,
+      0.757302463054657,
+      0.7572974562644958,
+      0.7553005814552307,
+      0.753344714641571,
+      0.7532935738563538,
+      0.7509563565254211,
+      0.7482579350471497,
+      0.7451451420783997,
+      0.7443950176239014,
+      0.7431556582450867,
+      0.7426689267158508,
+      0.7396599650382996,
+      0.7371536493301392,
+      0.7365996241569519,
+      0.7347152829170227,
+      0.7336517572402954,
+      0.7326081991195679,
+      0.7325156927108765,
+      0.7302993535995483,
+      0.729926347732544,
       0.7289118766784668,
-      0.7289034724235535,
-      0.7280722260475159,
-      0.7259584665298462,
-      0.7259330153465271
+      0.728903591632843,
+      0.7280725836753845,
+      0.7259583473205566,
+      0.7259331345558167
     ],
     "MultiSV": {
       "Candidates": [
@@ -54,7 +54,7 @@
           "Parts": [
             {
               "CosineScore": [
-                0.9257857799530029
+                0.9257851839065552
               ],
               "QueryPart": "male population",
               "SV": [
@@ -64,7 +64,7 @@
             {
               "CosineScore": [
                 0.92969810962677,
-                0.884743332862854
+                0.8847430348396301
               ],
               "QueryPart": "female population",
               "SV": [
@@ -80,7 +80,7 @@
           "Parts": [
             {
               "CosineScore": [
-                0.9117770791053772
+                0.9117769002914429
               ],
               "QueryPart": "male population female",
               "SV": [
@@ -89,8 +89,8 @@
             },
             {
               "CosineScore": [
-                0.8982378840446472,
-                0.8723467588424683
+                0.8982371687889099,
+                0.8723466992378235
               ],
               "QueryPart": "population",
               "SV": [
@@ -106,10 +106,10 @@
           "Parts": [
             {
               "CosineScore": [
-                0.808887243270874,
-                0.8034241199493408,
-                0.8017654418945312,
-                0.775155782699585
+                0.8088874816894531,
+                0.8034244179725647,
+                0.8017649054527283,
+                0.7751561999320984
               ],
               "QueryPart": "male",
               "SV": [
@@ -121,8 +121,8 @@
             },
             {
               "CosineScore": [
-                0.9170327186584473,
-                0.873018741607666
+                0.9170326590538025,
+                0.8730189204216003
               ],
               "QueryPart": "population female population",
               "SV": [