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Release 16.3.0 #828
Release 16.3.0 #828
Commits on May 6, 2022
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Commits on May 13, 2022
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Refactor multi selection adapter
- Add optional `diffSubtypes` to `IMultiSelectionAdapter` - Remove `ReprovisynMultiSelectionAdapter` - Add generics to `MultiSelectionAdapter` - Comment functions of `MultiSelectionAdapter`
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Remove
waitForIt
promise from selection adapter- Add and refactor return types `Promise<any>` to `Promise<void>` - Switch to async/await where possible - await `removeDynamicColumns` before `addDynamicColumns` -> previously it was not waited for the removal
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Added build-storybook to build script (#733)
* Added build-storybook to build script * Add tdp_core/dist alias to the storybook webpack config * updated version of storybook (#736) Co-authored-by: Moritz Heckmann <[email protected]> Co-authored-by: dvmoritzschoefl <[email protected]> Co-authored-by: Moritz Heckmann <[email protected]>
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Fix eslint for AggregateTypeSelected
Probably a missing type cast in PR #729
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Remove await
this.built
inwithoutTracking()
Waiting for `this.built` will never resolve/terminate and show an infite loading icon. Reason: `this.built` is created with `build()` in line 355 and it is only resolved after the `build()` call is complete. With the changes to the selection adapter the `this.selectionAdapter.selectionChanged` now returns a valid promise. Previously, `context.add()` did not return it's promise (see 919cfb2#diff-f0f07e4a6ac30a813315b152545245d4cf26830e01b701f3e82ff7b5c22363a7R18). Now, we are waiting until all dynamic columns are added. The circle closes when we add the columns which calls `withoutTracking()` which in-turn is waiting for the resolved `this.built` promise. As far as I can see, we always call `withoutTracking` on a built/resolved ranking view. In the other places (line 377 and 400) we have a dedicated `await this.built;` before triggering changes to dynamic columns. In my tests adding and removing columns via score and selection adapter worked as before. I also tested reloading the page and checked the result of the session. In all cases it looks the same as before.
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Commits on Jun 21, 2022
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Add Storybook stories for custom buttons (#708)
* create first storybook for button styles * add story for single button * change background * linting * fix background * add additional kind of buttons * typing * add functions for buttons into stories * started chaning source of button * finish Button storybook docu * linting problems * linting * styling of code * change style to UI * add comments * Added build-storybook to build script * Add tdp_core/dist alias to the storybook webpack config * added outline buttons, adjusted layout to not contain margin inside a story, added link to styleguide Co-authored-by: Michael Puehringer <[email protected]> Co-authored-by: Moritz Heckmann <[email protected]>
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added cypress run script to package json (#738)
Co-authored-by: Moritz Heckmann <[email protected]>
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Add exception handler middleware (#723)
* Add exception handler middleware * Extract default logging config and set it on server startup Co-authored-by: dvtschachinger <[email protected]>
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Add NODE_OPTIONS=--max_old_space_size=4096 to storybook scripts (#746)
* Add NODE_OPTIONS=--max_old_space_size=4096 to storybook scripts * Update build script to include storybook:build * Update cache key
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Fix SCSS warning for divide numbers using
/
(#758)Fix SCSS warning for divide numbers using /
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Show selection indicator next to scroll bar in rankings (#756)
Show LineUp selection indicator next to scroll bar
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Set modal focus based on tour visiblity and replace Bootstrap jQuery …
…modal with plain JS modal (#754) * Replace BS jQuery modal with plain JS modal Caleydo/tdp_bi_bioinfodb#1371 * Refactor modal options * Replace deprecated `evt.keyCode` with `evt.key` * Set modal focus flag based on tour's visibility Also revert dialog constructor parameter to `backdrop` only again. * Resolve some dependency cycles
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Upgrade to Font Awesome v6 (#732)
* update to fontawesome v6 * added fontawesome scss file * add dist files * Fix icon position in sidepanel tab * Update dependency [email protected] Co-authored-by: Moritz Heckmann <[email protected]> Co-authored-by: Holger Stitz <[email protected]>
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Added tsconfig.json to package.json files to allow the prepack script…
… to build via tsc
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Fix Error Where FormDialog Fails to Be Instantiated (#766)
check if `.tdp-tour-step-count` exists
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refactor: Avoid general aside styles caused by CLUE (#763)
Refactor CLUE aside styles * Avoid general `<aside>` styles * Copy general aside styles into nested panels
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refactor: Improve Cypress setup and use Cypress commands.js (#757)
Co-authored-by: Holger Stitz <[email protected]>
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feat: CLUE support for URL query parameter + rewrite hash parameters (#…
…762) * Replace deprecated `substr` with `substring` * Move PropertyHandler and HashProperties * Add CommonPropertyHandler + QueryPropertyHandler - Move some static functions back to the CLUEGraphManager * Add property handler options to ATDPApplication * Add destroy hook to remove event listener * Add URL property rewrite to CLUEGraphManager * Extract rewrite URL function to unit test * Add unit test for rewrite URL function * Refactor graph URL after persisting session * Fix typings in interface * Avoid property symbol only in URL string * Amend last commit to avoid empty hash only Co-authored-by: Michael Pühringer <[email protected]>
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Bump pyjwt from 2.1.0 to 2.4.0 (#728)
Bumps [pyjwt](https://github.com/jpadilla/pyjwt) from 2.1.0 to 2.4.0. - [Release notes](https://github.com/jpadilla/pyjwt/releases) - [Changelog](https://github.com/jpadilla/pyjwt/blob/master/CHANGELOG.rst) - [Commits](jpadilla/pyjwt@2.1.0...2.4.0) --- updated-dependencies: - dependency-name: pyjwt dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Michael Pühringer <[email protected]>
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* Add rdkit image to router (not working? ignoring prefix/namespace?) Add api to make rdkit produce SVGs Add optional extra flavor for rdkit in setup.py Add tests (working in a standalone project) Add models for molecule parsing Add utils for rdkit-stuff * Reformat + fix imports (via make format) Add prefix/namespace-functionality to visyn_server in the same way, flask has it Cleanup tests * Make tests not run if you don't have rdkit * Fix linter errors * Change tag from default (none) to images and change docstring (from "todo move" to actual) * Make rdkit mandatory * Remove router namespace support for fastapi and add warning if it's used Remove murcko wrapper Remove unneccesary fastapi object creation Remove create_api in img_api Add app via init_app instead of via registry * Changed path form /image/ to /rdkit/ Changed kind of parameters from url params to query params, i.e. /rdkit/C -> /rdkit/?structure=C due to slashes Adapted tests Better / more correct type hints * Change to return no content (+ proper no content response code) * Fix imports * Add structured image column, renderer, and filter dialog for SMILES strings to ranking (#755) * Add molecule column + renderer for LineUp #741 * Implement fetch structured image #741 * Add SMILES renderer and column to Ranking.tsx #741 * Adapt to latest rdkit API changes * Add custom structure image filter dialog (wip) * Add loading icon + error msg to filter dialog * Remove orphan import * Fix linter warnings and improve code * Deny to set string filter * Fix lint * Fix `filter = null` case * Rename folder to `structureImage` and add index.ts * Update dist files * Add empty summary renderer Otherwise an error is thrown when switching visualizations for the smiles column * Fix lint * Nest structured image i18n strings * Set default column width for smiles column * Set row height based on smiles column width * Set min/max domain for number col domain Related to #718 The parameter default, i.e. `min = Number.NaN`, is only used if the parameter is `undefined`. However, when the parameter is `null` it does not assign `Number.NaN`. With this commit `null` and `undefined` result in `Number.NaN`. * Set default summary renderer for smiles col * StructuredImageColumn extends ValueColumn - Removes all string related dialogs and functionality (e.g., group, sort, ...) - Add rename dialog - Remove `order` to default -> in menu: rename then filter Co-authored-by: Michael Puehringer <[email protected]> Co-authored-by: Michael Pühringer <[email protected]> * Minor improvements and feedback incorporation Co-authored-by: Holger Stitz <[email protected]> Co-authored-by: Michael Puehringer <[email protected]> Co-authored-by: Michael Pühringer <[email protected]>
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Add test db setup fixture (#771)
* Add test_db fixture * Reformatting * Simplify + fail better + test fixture * Fix weird import corner case * Fixed import order * Move test dev dependencies from requirements_dev to main, so things depending on core also have it. Also, mark both db-tests as xfail. Co-authored-by: Michael Puehringer <[email protected]> Co-authored-by: Michael Pühringer <[email protected]>
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Commits on Aug 31, 2022
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Commits on Sep 1, 2022
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Anita Steiner authored
Sep 8, 2022 Configuration menu - View commit details
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Commits on Sep 15, 2022
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* adding wrapper div around ranking.tsx * moving around styles from RankingViewComponent -> Ranking * adding back tdp-busy
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Fixed filtering of structure image column (#784)
Co-authored-by: Holger Stitz <[email protected]>
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Remove modal element when hiding a dialog (#783)
Co-authored-by: Holger Stitz <[email protected]>
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Improve typings for CLUE and refactor async functions (#785)
* Improve typings for CLUE `graph.persist()` datavisyn/ordino_eins#525 * Fix typing of MemoryGraph.restore()
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Commits on Sep 19, 2022
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Commits on Sep 28, 2022
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Commits on Sep 29, 2022
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fix: don't initialize general vis in
ARankingView
when disabled (#796)Previously the general vis was intialized and running the background, even though it was disabled; only the button was hidden. Now the general vis not even initialized.
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Commits on Sep 30, 2022
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Commits on Oct 4, 2022
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feat: adding Mantine
VisynApp
(#787)Co-authored-by: Holger Stitz <[email protected]>
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Commits on Oct 5, 2022
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Commits on Oct 11, 2022
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deps: Update dependency [email protected] (#793)
chore: Update dependency [email protected] Co-authored-by: Michael Pühringer <[email protected]>
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feat: Add
removePlugins
method to plugin registry (#799)Co-authored-by: Holger Stitz <[email protected]>
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Commits on Oct 14, 2022
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Commits on Oct 19, 2022
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fix: Avoid
AttachmentUtils
calls when Reprovisyn feature flag is en……abled (#801) Co-authored-by: Holger Stitz <[email protected]>
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Commits on Oct 24, 2022
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Commits on Nov 22, 2022
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Commits on Nov 23, 2022
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Commits on Nov 24, 2022
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Commits on Dec 7, 2022
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fix: remove range id mapping in
rangeOf
in DB view filter (#813)* fix: remove range id mapping in DB view filter Closes Caleydo/tdp_bi_bioinfodb#1416 * fix lint
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Commits on Dec 13, 2022
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Commits on Dec 21, 2022
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Fix missing lineup color mappings by adjusting styles (#802)
Adjusted color mapping styles
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Commits on Jan 11, 2023
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Cypress and CI integration (#811)
* Cypress 11 and CI integration * Enable cypress in build.yml * Delete build_nightly.yml
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Commits on Jan 12, 2023
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Improve performance, upgrade deps and logging, remove numpy, numba, p…
…andas (#816) * Upgrade deps and remove numpy, numba, pandas * Replace BaseHTTPMiddleware with much faster ASGI equalivalent * Increase anyio threads to 100 * Remove broken etag support * Improved logging * Switch to a2wsgi * Remove a2wsgi again * Remove greenifier extension * Bump FastAPI to 0.89.0 * Add pytest in settings.json * Set SQLAlchemy version to >= 1.4.40 and <= 1.4.46 to allow SQLModel > 0.0.6 (#819) * Loosen Flask and marshmallow-sqlalchemy versions for superset * Removed flake8, isort, pep8 in favor of ruff
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Commits on Jan 13, 2023
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Commits on Jan 17, 2023
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fix(storybook): upgrade to webpack5 (#810)
* upgrade webpack for storybook * use webpack.config from storybook and override rules * add HtmlWebpackPlugin * Fix storybook path aliases * use latest version of storybook Co-authored-by: Michael Puehringer <[email protected]> Co-authored-by: Michael Pühringer <[email protected]>
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Commits on Jan 24, 2023
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Enable Custom Vis in LineUp (#820)
* enabled custom vis in lineup * Made idField optional Co-authored-by: Moritz Heckmann <[email protected]> Co-authored-by: Michael Puehringer <[email protected]>
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Commits on Jan 26, 2023
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Commits on Feb 3, 2023
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feat: converting general vis to Mantine and add hexbin visualization (#…
…786) Co-authored-by: Holger Stitz <[email protected]> Co-authored-by: Michael Pühringer <[email protected]> Co-authored-by: Michael Puehringer <[email protected]>
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Commits on Feb 6, 2023
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fix: change vis type name to sentence case (#827)
changing name
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Commits on Feb 7, 2023
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fix(cypress): health check component test (#829)
fix(cypress): health check
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