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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,39 @@ | ||
"","x" | ||
"1","Sample-208" | ||
"2","Sample-212" | ||
"3","Sample-210" | ||
"4","Sample-209" | ||
"5","Sample-207" | ||
"6","Sample-213" | ||
"7","Sample-214" | ||
"8","Sample-38" | ||
"9","Sample-69" | ||
"10","Sample-182" | ||
"11","Sample-61" | ||
"12","Sample-57" | ||
"13","Sample-50" | ||
"14","Sample-58" | ||
"15","Sample-51" | ||
"16","Sample-60" | ||
"17","Sample-52" | ||
"18","Sample-59" | ||
"19","Sample-204" | ||
"20","Sample-181" | ||
"21","Sample-183" | ||
"22","Sample-35" | ||
"23","Sample-34" | ||
"24","Sample-40" | ||
"25","Sample-37" | ||
"26","Sample-33" | ||
"27","Sample-203" | ||
"28","Sample-32" | ||
"29","Sample-71" | ||
"30","Sample-179" | ||
"31","Sample-68" | ||
"32","Sample-36" | ||
"33","Sample-73" | ||
"34","Sample-39" | ||
"35","Sample-180" | ||
"36","Sample-211" | ||
"37","Sample-178" | ||
"38","Sample-56" |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,39 @@ | ||
"","x" | ||
"1","Sample-208" | ||
"2","Sample-212" | ||
"3","Sample-210" | ||
"4","Sample-209" | ||
"5","Sample-207" | ||
"6","Sample-213" | ||
"7","Sample-214" | ||
"8","Sample-38" | ||
"9","Sample-69" | ||
"10","Sample-182" | ||
"11","Sample-61" | ||
"12","Sample-57" | ||
"13","Sample-50" | ||
"14","Sample-58" | ||
"15","Sample-51" | ||
"16","Sample-60" | ||
"17","Sample-52" | ||
"18","Sample-59" | ||
"19","Sample-204" | ||
"20","Sample-181" | ||
"21","Sample-183" | ||
"22","Sample-35" | ||
"23","Sample-34" | ||
"24","Sample-40" | ||
"25","Sample-37" | ||
"26","Sample-33" | ||
"27","Sample-203" | ||
"28","Sample-32" | ||
"29","Sample-71" | ||
"30","Sample-179" | ||
"31","Sample-68" | ||
"32","Sample-36" | ||
"33","Sample-73" | ||
"34","Sample-39" | ||
"35","Sample-180" | ||
"36","Sample-211" | ||
"37","Sample-178" | ||
"38","Sample-56" |
39 changes: 39 additions & 0 deletions
39
tests/testthat/_snaps/comp_barplot/SAMPLE_order-overweight.csv
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,39 @@ | ||
"","x" | ||
"1","Sample-208" | ||
"2","Sample-212" | ||
"3","Sample-210" | ||
"4","Sample-209" | ||
"5","Sample-207" | ||
"6","Sample-213" | ||
"7","Sample-214" | ||
"8","Sample-38" | ||
"9","Sample-69" | ||
"10","Sample-182" | ||
"11","Sample-61" | ||
"12","Sample-57" | ||
"13","Sample-50" | ||
"14","Sample-58" | ||
"15","Sample-51" | ||
"16","Sample-60" | ||
"17","Sample-52" | ||
"18","Sample-59" | ||
"19","Sample-204" | ||
"20","Sample-181" | ||
"21","Sample-183" | ||
"22","Sample-35" | ||
"23","Sample-34" | ||
"24","Sample-40" | ||
"25","Sample-37" | ||
"26","Sample-33" | ||
"27","Sample-203" | ||
"28","Sample-32" | ||
"29","Sample-71" | ||
"30","Sample-179" | ||
"31","Sample-68" | ||
"32","Sample-36" | ||
"33","Sample-73" | ||
"34","Sample-39" | ||
"35","Sample-180" | ||
"36","Sample-211" | ||
"37","Sample-178" | ||
"38","Sample-56" |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,39 @@ | ||
"","x" | ||
"1","Sample-180" | ||
"2","Sample-37" | ||
"3","Sample-36" | ||
"4","Sample-73" | ||
"5","Sample-211" | ||
"6","Sample-178" | ||
"7","Sample-203" | ||
"8","Sample-179" | ||
"9","Sample-71" | ||
"10","Sample-68" | ||
"11","Sample-32" | ||
"12","Sample-33" | ||
"13","Sample-39" | ||
"14","Sample-40" | ||
"15","Sample-34" | ||
"16","Sample-35" | ||
"17","Sample-52" | ||
"18","Sample-56" | ||
"19","Sample-59" | ||
"20","Sample-60" | ||
"21","Sample-57" | ||
"22","Sample-58" | ||
"23","Sample-214" | ||
"24","Sample-51" | ||
"25","Sample-69" | ||
"26","Sample-50" | ||
"27","Sample-61" | ||
"28","Sample-207" | ||
"29","Sample-208" | ||
"30","Sample-213" | ||
"31","Sample-210" | ||
"32","Sample-209" | ||
"33","Sample-212" | ||
"34","Sample-182" | ||
"35","Sample-38" | ||
"36","Sample-183" | ||
"37","Sample-181" | ||
"38","Sample-204" |
10 changes: 10 additions & 0 deletions
10
tests/testthat/_snaps/comp_barplot/unique_taxa_order-lean.csv
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---|---|---|
@@ -0,0 +1,10 @@ | ||
"","x" | ||
"1","other" | ||
"2","Allistipes et rel." | ||
"3","Clostridium symbiosum et rel." | ||
"4","Clostridium cellulosi et rel." | ||
"5","Faecalibacterium prausnitzii et rel." | ||
"6","Prevotella oralis et rel." | ||
"7","Oscillospira guillermondii et rel." | ||
"8","Bacteroides vulgatus et rel." | ||
"9","Prevotella melaninogenica et rel." |
10 changes: 10 additions & 0 deletions
10
tests/testthat/_snaps/comp_barplot/unique_taxa_order-obese.csv
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,10 @@ | ||
"","x" | ||
"1","other" | ||
"2","Allistipes et rel." | ||
"3","Clostridium symbiosum et rel." | ||
"4","Clostridium cellulosi et rel." | ||
"5","Faecalibacterium prausnitzii et rel." | ||
"6","Prevotella oralis et rel." | ||
"7","Oscillospira guillermondii et rel." | ||
"8","Bacteroides vulgatus et rel." | ||
"9","Prevotella melaninogenica et rel." |
10 changes: 10 additions & 0 deletions
10
tests/testthat/_snaps/comp_barplot/unique_taxa_order-overweight.csv
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,10 @@ | ||
"","x" | ||
"1","other" | ||
"2","Allistipes et rel." | ||
"3","Clostridium symbiosum et rel." | ||
"4","Clostridium cellulosi et rel." | ||
"5","Faecalibacterium prausnitzii et rel." | ||
"6","Prevotella oralis et rel." | ||
"7","Oscillospira guillermondii et rel." | ||
"8","Bacteroides vulgatus et rel." | ||
"9","Prevotella melaninogenica et rel." |
120 changes: 120 additions & 0 deletions
120
tests/testthat/_snaps/comp_barplot/unique_taxa_order.csv
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---|---|---|
@@ -0,0 +1,120 @@ | ||
"","x" | ||
"1","Gemella" | ||
"2","Aeromonas" | ||
"3","Pseudomonas" | ||
"4","Actinomycetaceae" | ||
"5","Uncultured Chroococcales" | ||
"6","Atopobium" | ||
"7","Staphylococcus" | ||
"8","Lactobacillus catenaformis et rel." | ||
"9","Wissella et rel." | ||
"10","Granulicatella" | ||
"11","Brachyspira" | ||
"12","Aquabacterium" | ||
"13","Leminorella" | ||
"14","Moraxellaceae" | ||
"15","Burkholderia" | ||
"16","Corynebacterium" | ||
"17","Bacillus" | ||
"18","Xanthomonadaceae" | ||
"19","Megamonas hypermegale et rel." | ||
"20","Eubacterium limosum et rel." | ||
"21","Propionibacterium" | ||
"22","Lactococcus" | ||
"23","Bilophila et rel." | ||
"24","Oceanospirillum" | ||
"25","Peptostreptococcus micros et rel." | ||
"26","Helicobacter" | ||
"27","Eubacterium cylindroides et rel." | ||
"28","Yersinia et rel." | ||
"29","Clostridium ramosum et rel." | ||
"30","Vibrio" | ||
"31","Catenibacterium mitsuokai et rel." | ||
"32","Uncultured Selenomonadaceae" | ||
"33","Weissella et rel." | ||
"34","Bulleidia moorei et rel." | ||
"35","Eubacterium siraeum et rel." | ||
"36","Uncultured Bacteroidetes" | ||
"37","Coprobacillus catenaformis et rel." | ||
"38","Peptococcus niger et rel." | ||
"39","Eggerthella lenta et rel." | ||
"40","Campylobacter" | ||
"41","Lactobacillus salivarius et rel." | ||
"42","Prevotella ruminicola et rel." | ||
"43","Desulfovibrio et rel." | ||
"44","Fusobacteria" | ||
"45","Haemophilus" | ||
"46","Proteus et rel." | ||
"47","Streptococcus intermedius et rel." | ||
"48","Enterococcus" | ||
"49","Veillonella" | ||
"50","Clostridium stercorarium et rel." | ||
"51","Ruminococcus lactaris et rel." | ||
"52","Collinsella" | ||
"53","Lactobacillus gasseri et rel." | ||
"54","Serratia" | ||
"55","Alcaligenes faecalis et rel." | ||
"56","Anaerovorax odorimutans et rel." | ||
"57","Lactobacillus plantarum et rel." | ||
"58","Bacteroides intestinalis et rel." | ||
"59","Roseburia intestinalis et rel." | ||
"60","Klebisiella pneumoniae et rel." | ||
"61","Eubacterium ventriosum et rel." | ||
"62","Eubacterium hallii et rel." | ||
"63","Clostridium difficile et rel." | ||
"64","Clostridium (sensu stricto)" | ||
"65","Oxalobacter formigenes et rel." | ||
"66","Clostridium colinum et rel." | ||
"67","Ruminococcus gnavus et rel." | ||
"68","Eubacterium biforme et rel." | ||
"69","Megasphaera elsdenii et rel." | ||
"70","Mitsuokella multiacida et rel." | ||
"71","Enterobacter aerogenes et rel." | ||
"72","Papillibacter cinnamivorans et rel." | ||
"73","Bacteroides stercoris et rel." | ||
"74","Tannerella et rel." | ||
"75","Clostridium nexile et rel." | ||
"76","Ruminococcus bromii et rel." | ||
"77","Uncultured Clostridiales II" | ||
"78","Outgrouping clostridium cluster XIVa" | ||
"79","Eubacterium rectale et rel." | ||
"80","Streptococcus mitis et rel." | ||
"81","Lachnobacillus bovis et rel." | ||
"82","Uncultured Mollicutes" | ||
"83","Bacteroides plebeius et rel." | ||
"84","Coprococcus eutactus et rel." | ||
"85","Bifidobacterium" | ||
"86","Phascolarctobacterium faecium et rel." | ||
"87","Anaerostipes caccae et rel." | ||
"88","Sutterella wadsworthia et rel." | ||
"89","Lachnospira pectinoschiza et rel." | ||
"90","Escherichia coli et rel." | ||
"91","Prevotella tannerae et rel." | ||
"92","Streptococcus bovis et rel." | ||
"93","Anaerotruncus colihominis et rel." | ||
"94","Bacteroides splachnicus et rel." | ||
"95","Clostridium leptum et rel." | ||
"96","Dorea formicigenerans et rel." | ||
"97","Akkermansia" | ||
"98","Ruminococcus callidus et rel." | ||
"99","Bacteroides uniformis et rel." | ||
"100","Clostridium sphenoides et rel." | ||
"101","Bacteroides ovatus et rel." | ||
"102","Bryantella formatexigens et rel." | ||
"103","Parabacteroides distasonis et rel." | ||
"104","Uncultured Clostridiales I" | ||
"105","Bacteroides fragilis et rel." | ||
"106","Butyrivibrio crossotus et rel." | ||
"107","Dialister" | ||
"108","Ruminococcus obeum et rel." | ||
"109","Clostridium orbiscindens et rel." | ||
"110","Subdoligranulum variable at rel." | ||
"111","Sporobacter termitidis et rel." | ||
"112","Allistipes et rel." | ||
"113","Clostridium symbiosum et rel." | ||
"114","Clostridium cellulosi et rel." | ||
"115","Faecalibacterium prausnitzii et rel." | ||
"116","Prevotella oralis et rel." | ||
"117","Oscillospira guillermondii et rel." | ||
"118","Bacteroides vulgatus et rel." | ||
"119","Prevotella melaninogenica et rel." |
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