5C-CBFb-SMMHC-Inhib

This is the set of perl/python/R scripts used to process the 5C data in the paper:

CBFb-SMMHC inhibition disrupts enhancer chromatin dynamics and represses MYC expression in inv(16) leukemia ?? Journal details are going to be added when the paper is available online ???

Data Processing Steps

The data processing steps can be found in the file data_processing_steps.md

Manuscript web-link

?? Manuscript can link will be added when the paper is available online. ??

Geo data web-link

?? A link to GEO data is going to be added when the data is released on GEO site ??

Code

Source code is available in the following github repositories:

https://github.com/dekkerlab/cworld-dekker

https://github.com/dekkerlab/cmapping

https://github.com/dekkerlab/hdf2tab

https://github.com/blajoie/tab2hdf

https://github.com/dekkerlab/balance

Primer Pool

The set of primers used in the 5C experiments are provided in the file PRIMERPOOL_6217_KelliherMyc.fa