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update with newest options #1

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update with newest options #1

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19 changes: 1 addition & 18 deletions recipes/gpm_imerg/recipe.py
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@
from requests.auth import HTTPBasicAuth

from pangeo_forge_recipes.patterns import ConcatDim, FilePattern
from pangeo_forge_recipes.transforms import OpenWithKerchunk, WriteCombinedReference
from pangeo_forge_recipes.transforms import OpenWithKerchunk, WriteCombinedReference, ConsolidateMetadata

ED_USERNAME = os.environ['EARTHDATA_USERNAME']
ED_PASSWORD = os.environ['EARTHDATA_PASSWORD']
Expand Down Expand Up @@ -109,20 +109,6 @@ def earthdata_auth(username: str, password: str):
fsspec_open_kwargs = earthdata_auth(ED_USERNAME, ED_PASSWORD)


# Remove method when https://github.com/pangeo-forge/pangeo-forge-recipes/pull/556/files is merged.
@beam.ptransform_fn
def ConsolidateMetadata(pcoll: beam.PCollection) -> beam.PCollection:
"""Consolidate metadata into a single .zmetadata field.
See zarr.consolidate_metadata() for details.
"""

def _consolidate(store: zarr.storage.FSStore) -> zarr.storage.FSStore:
zarr.consolidate_metadata(store, path=None)
return store

return pcoll | beam.Map(_consolidate)


@dataclass
class ValidateDatasetDimensions(beam.PTransform):
"""Open the reference.json in xarray and validate dimensions."""
Expand Down Expand Up @@ -163,9 +149,6 @@ def expand(
concat_dims=CONCAT_DIMS,
identical_dims=IDENTICAL_DIMS,
store_name=SHORT_NAME,
target_options=fsspec_open_kwargs,
remote_options=fsspec_open_kwargs,
remote_protocol=earthdata_protocol,
)
| ConsolidateMetadata()
| ValidateDatasetDimensions(
Expand Down
1 change: 1 addition & 0 deletions recipes/gpm_imerg/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,2 +1,3 @@
s3fs==2023.10.0
boto3==1.28.71
pangeo-forge-recipes>=0.10.4