Skip to content

Commit

Permalink
htdocs update (master)
Browse files Browse the repository at this point in the history
  • Loading branch information
DiamondLightSource-build-server committed Feb 9, 2025
1 parent 5ae06b8 commit 9e24953
Show file tree
Hide file tree
Showing 4 changed files with 43 additions and 43 deletions.
2 changes: 1 addition & 1 deletion documentation/programs/dials_cosym.html
Original file line number Diff line number Diff line change
Expand Up @@ -281,7 +281,7 @@ <h2>Example<a class="headerlink" href="#example" title="Link to this heading">¶
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1268-gfb0c04f54
The following parameters have been modified:

input {
Expand Down
40 changes: 20 additions & 20 deletions documentation/tutorials/mpro_x0692.html
Original file line number Diff line number Diff line change
Expand Up @@ -79,7 +79,7 @@ <h3>Import<a class="headerlink" href="#import" title="Link to this heading">¶</
</div>
<p>The output just describes what the software understands of the images it was
passed, in this case one sequence of data containing 400 images:</p>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1268-gfb0c04f54
The following parameters have been modified:

input {
Expand Down Expand Up @@ -128,7 +128,7 @@ <h3>Find Spots<a class="headerlink" href="#find-spots" title="Link to this headi
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>spotfinder {
Expand Down Expand Up @@ -637,7 +637,7 @@ <h3>Indexing<a class="headerlink" href="#indexing" title="Link to this heading">
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>input {
Expand Down Expand Up @@ -1365,7 +1365,7 @@ <h3>Bravais Lattice Refinement<a class="headerlink" href="#bravais-lattice-refin
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>refinement {
Expand Down Expand Up @@ -1474,7 +1474,7 @@ <h3>Bravais Lattice Refinement<a class="headerlink" href="#bravais-lattice-refin
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>refinement {
Expand Down Expand Up @@ -1599,7 +1599,7 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>integration {
<span class="linenos"> 4</span> mp {
Expand Down Expand Up @@ -2149,12 +2149,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 548</span>
<span class="linenos"> 549</span>Timing information for reference profile formation
<span class="linenos"> 550</span>+-------------------+---------------+
<span class="linenos"> 551</span>| Read time | 18.22 seconds |
<span class="linenos"> 552</span>| Extract time | 0.30 seconds |
<span class="linenos"> 551</span>| Read time | 16.78 seconds |
<span class="linenos"> 552</span>| Extract time | 0.40 seconds |
<span class="linenos"> 553</span>| Pre-process time | 0.02 seconds |
<span class="linenos"> 554</span>| Process time | 9.21 seconds |
<span class="linenos"> 554</span>| Process time | 9.23 seconds |
<span class="linenos"> 555</span>| Post-process time | 0.00 seconds |
<span class="linenos"> 556</span>| Total time | 27.95 seconds |
<span class="linenos"> 556</span>| Total time | 26.53 seconds |
<span class="linenos"> 557</span>+-------------------+---------------+
<span class="linenos"> 558</span>
<span class="linenos"> 559</span>================================================================================
Expand Down Expand Up @@ -2685,12 +2685,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos">1084</span>
<span class="linenos">1085</span>Timing information for integration
<span class="linenos">1086</span>+-------------------+----------------+
<span class="linenos">1087</span>| Read time | 22.87 seconds |
<span class="linenos">1088</span>| Extract time | 7.45 seconds |
<span class="linenos">1087</span>| Read time | 18.80 seconds |
<span class="linenos">1088</span>| Extract time | 6.46 seconds |
<span class="linenos">1089</span>| Pre-process time | 0.27 seconds |
<span class="linenos">1090</span>| Process time | 138.88 seconds |
<span class="linenos">1090</span>| Process time | 136.88 seconds |
<span class="linenos">1091</span>| Post-process time | 0.00 seconds |
<span class="linenos">1092</span>| Total time | 170.39 seconds |
<span class="linenos">1092</span>| Total time | 163.42 seconds |
<span class="linenos">1093</span>+-------------------+----------------+
<span class="linenos">1094</span>
<span class="linenos">1095</span>Removing 22844 unintegrated reflections of 199389 total
Expand Down Expand Up @@ -2742,7 +2742,7 @@ <h3>Symmetry analysis<a class="headerlink" href="#symmetry-analysis" title="Link
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>best_monoclinic_beta = False
Expand Down Expand Up @@ -2914,7 +2914,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>input {
<span class="linenos"> 4</span> experiments = symmetrized.expt
Expand Down Expand Up @@ -2983,7 +2983,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos"> 67</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos"> 68</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos"> 69</span>
<span class="linenos"> 70</span>Time taken for refinement 7.70
<span class="linenos"> 70</span>Time taken for refinement 7.65
<span class="linenos"> 71</span>
<span class="linenos"> 72</span>Refinement steps:
<span class="linenos"> 73</span>+--------+--------+----------+
Expand Down Expand Up @@ -3125,7 +3125,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">209</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">210</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">211</span>
<span class="linenos">212</span>Time taken for refinement 4.35
<span class="linenos">212</span>Time taken for refinement 4.37
<span class="linenos">213</span>
<span class="linenos">214</span>Refinement steps:
<span class="linenos">215</span>+--------+--------+----------+
Expand All @@ -3149,7 +3149,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">233</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">234</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">235</span>
<span class="linenos">236</span>Time taken for refinement 0.92
<span class="linenos">236</span>Time taken for refinement 0.90
<span class="linenos">237</span>
<span class="linenos">238</span>Refinement steps:
<span class="linenos">239</span>+--------+--------+----------+
Expand Down Expand Up @@ -3199,7 +3199,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">283</span>The reflection table variances have been adjusted to account for the
<span class="linenos">284</span>uncertainty in the scaling model
<span class="linenos">285</span>
<span class="linenos">286</span>Total time taken: 21.0689s
<span class="linenos">286</span>Total time taken: 21.0210s
<span class="linenos">287</span>
<span class="linenos">288</span>================================================================================
<span class="linenos">289</span>
Expand Down
42 changes: 21 additions & 21 deletions documentation/tutorials/processing_in_detail_betalactamase.html
Original file line number Diff line number Diff line change
Expand Up @@ -85,7 +85,7 @@ <h3>Import<a class="headerlink" href="#import" title="Link to this heading">¶</
</div>
<p>The output just describes what the software understands of the images it was
passed, in this case one sequence of data containing 720 images:</p>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1268-gfb0c04f54
The following parameters have been modified:

input {
Expand Down Expand Up @@ -134,7 +134,7 @@ <h3>Find Spots<a class="headerlink" href="#find-spots" title="Link to this headi
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>spotfinder {
Expand Down Expand Up @@ -965,7 +965,7 @@ <h3>Indexing<a class="headerlink" href="#indexing" title="Link to this heading">
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>input {
Expand Down Expand Up @@ -1693,7 +1693,7 @@ <h3>Bravais Lattice Refinement<a class="headerlink" href="#bravais-lattice-refin
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>input {
Expand Down Expand Up @@ -1869,7 +1869,7 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>integration {
<span class="linenos"> 4</span> mp {
Expand Down Expand Up @@ -2717,12 +2717,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 846</span>
<span class="linenos"> 847</span>Timing information for reference profile formation
<span class="linenos"> 848</span>+-------------------+---------------+
<span class="linenos"> 849</span>| Read time | 68.81 seconds |
<span class="linenos"> 850</span>| Extract time | 0.66 seconds |
<span class="linenos"> 849</span>| Read time | 63.72 seconds |
<span class="linenos"> 850</span>| Extract time | 0.64 seconds |
<span class="linenos"> 851</span>| Pre-process time | 0.11 seconds |
<span class="linenos"> 852</span>| Process time | 29.50 seconds |
<span class="linenos"> 852</span>| Process time | 29.55 seconds |
<span class="linenos"> 853</span>| Post-process time | 0.00 seconds |
<span class="linenos"> 854</span>| Total time | 99.24 seconds |
<span class="linenos"> 854</span>| Total time | 94.12 seconds |
<span class="linenos"> 855</span>+-------------------+---------------+
<span class="linenos"> 856</span>
<span class="linenos"> 857</span>================================================================================
Expand Down Expand Up @@ -3573,12 +3573,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos">1702</span>
<span class="linenos">1703</span>Timing information for integration
<span class="linenos">1704</span>+-------------------+----------------+
<span class="linenos">1705</span>| Read time | 58.29 seconds |
<span class="linenos">1706</span>| Extract time | 2.68 seconds |
<span class="linenos">1707</span>| Pre-process time | 0.49 seconds |
<span class="linenos">1708</span>| Process time | 146.65 seconds |
<span class="linenos">1705</span>| Read time | 53.51 seconds |
<span class="linenos">1706</span>| Extract time | 2.77 seconds |
<span class="linenos">1707</span>| Pre-process time | 0.47 seconds |
<span class="linenos">1708</span>| Process time | 146.43 seconds |
<span class="linenos">1709</span>| Post-process time | 0.00 seconds |
<span class="linenos">1710</span>| Total time | 209.23 seconds |
<span class="linenos">1710</span>| Total time | 203.83 seconds |
<span class="linenos">1711</span>+-------------------+----------------+
<span class="linenos">1712</span>
<span class="linenos">1713</span>Removing 41623 unintegrated reflections of 368701 total
Expand Down Expand Up @@ -3630,7 +3630,7 @@ <h3>Symmetry analysis<a class="headerlink" href="#symmetry-analysis" title="Link
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>input {
Expand Down Expand Up @@ -3802,7 +3802,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1266-gb6c0973a7
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1268-gfb0c04f54
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>input {
<span class="linenos"> 4</span> experiments = symmetrized.expt
Expand Down Expand Up @@ -3871,7 +3871,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos"> 67</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos"> 68</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos"> 69</span>
<span class="linenos"> 70</span>Time taken for refinement 3.57
<span class="linenos"> 70</span>Time taken for refinement 3.60
<span class="linenos"> 71</span>
<span class="linenos"> 72</span>Refinement steps:
<span class="linenos"> 73</span>+--------+--------+----------+
Expand Down Expand Up @@ -3929,7 +3929,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">125</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">126</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos">127</span>
<span class="linenos">128</span>Time taken for refinement 1.00
<span class="linenos">128</span>Time taken for refinement 1.01
<span class="linenos">129</span>
<span class="linenos">130</span>Refinement steps:
<span class="linenos">131</span>+--------+--------+----------+
Expand Down Expand Up @@ -3981,7 +3981,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">177</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">178</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">179</span>
<span class="linenos">180</span>Time taken for refinement 3.56
<span class="linenos">180</span>Time taken for refinement 3.61
<span class="linenos">181</span>
<span class="linenos">182</span>Refinement steps:
<span class="linenos">183</span>+--------+--------+----------+
Expand All @@ -4002,7 +4002,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">198</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">199</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">200</span>
<span class="linenos">201</span>Time taken for refinement 1.12
<span class="linenos">201</span>Time taken for refinement 1.14
<span class="linenos">202</span>
<span class="linenos">203</span>Refinement steps:
<span class="linenos">204</span>+--------+--------+----------+
Expand Down Expand Up @@ -4052,7 +4052,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">248</span>The reflection table variances have been adjusted to account for the
<span class="linenos">249</span>uncertainty in the scaling model
<span class="linenos">250</span>
<span class="linenos">251</span>Total time taken: 18.6186s
<span class="linenos">251</span>Total time taken: 18.8791s
<span class="linenos">252</span>
<span class="linenos">253</span>================================================================================
<span class="linenos">254</span>
Expand Down
2 changes: 1 addition & 1 deletion searchindex.js

Large diffs are not rendered by default.

0 comments on commit 9e24953

Please sign in to comment.