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Convenience PR for Viewer code#48

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camillescott wants to merge 15 commits intomasterdib-lab/dammit:masterfrom viewerdib-lab/dammit:viewerCopy head branch name to clipboard

+8,648-367

Commits

Commits on Feb 26, 2016

• Separate MAF parser into its own class, add fileio submodule

  camillescott

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  adc186f

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• Merge branch 'master' into module_access

  camillescott

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  1c06ea5

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• Fixes to subpackage structure, imports

  camillescott

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  b2dc9ef

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• Merge branch 'master' into module_access

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  4d9182f

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Commits on Mar 2, 2016

• Refactor the stats task to do a summary of the run

  camillescott

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  ae65d1b

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Commits on Mar 3, 2016

• Add view exec

  camillescott

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  9cf048b

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• add ncbi data to databases, add config info for viewer

  camillescott

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  1db3f87

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• Sketched out viewer code

  camillescott

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  b454e41

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• Refactor GFF output format

  camillescott

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  271e8c9

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• add zodb task, summary task

  camillescott

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  cfc20c3

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• Finish database connection stuff

  camillescott

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  0b6d46d

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• database creation task completion

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  0e3e4c1

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• update manifest

  camillescott

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  7595e3a

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• quick fix to type of --verbosity arg

  camillescott

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  9f7b4f3

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• working iteration of gene model viewer

  camillescott

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  0ff6975

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