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update docs
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ctb committed Jan 17, 2022
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[toc]

Note: using local genome collections currently requires [genome-grist#130](https://github.com/dib-lab/genome-grist/pull/130).

## Overview

genome-grist does the following:
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### Step 0: Install genome-grist and set up your directory

<!-- EITHER follow the installation instructions (@@) -->

For now, do this in the genome-grist development directory. Clone the genome-grist repo, create the grist environment with conda, and then:

Switch to the appropriate branch:

```
git switch allow/private
git pull
```
Follow the installation instructions for genome-grist and make sure
you're in a conda environment where genome-grist is installed.

and make sure you've installed things appropriately:
```
pip install -e .
```
you may also need sourmash...
You will also need sourmash...
```
pip install sourmash
```

Now you should be good to go!
and now you should be good to go!

### Step 1: Download and unpack the `podar` reference genomes

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