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Bump snakemake from 7.25.0 to 7.29.0 #288

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@dependabot dependabot bot commented on behalf of github Jun 23, 2023

Bumps snakemake from 7.25.0 to 7.29.0.

Release notes

Sourced from snakemake's releases.

v7.29.0

7.29.0 (2023-06-21)

Features

  • introduce --workflow-profile for additional workflow specific profiles that overwrite global profiles; add ability to define key-value CLI flags like --set-threads or --set-resources as multi-level dictionaries in profile config yaml files (#2310) (9675c17)

Bug Fixes

v7.28.3

7.28.3 (2023-06-16)

Bug Fixes

  • Detect pandas availability to select serializer (#2300) (e08a771)

Performance Improvements

  • avoid superflous mtime checks when the same file is referred to by multiple jobs (#2284) (eb6e2e1)

Documentation

  • update docs for azbatch and dockerhub ref (#2298) (908dbf1)

v7.28.2

7.28.2 (2023-06-13)

Bug Fixes

  • fix pandas import handling in metadata persistence (27f7b40)

v7.28.1

7.28.1 (2023-06-11)

Bug Fixes

  • Bump yte from >=1.0,<2.0 to >=1.5.1,<2.0 (#2275) (8c0b34f)
  • remove superfluous dependency (aad61a0)

... (truncated)

Changelog

Sourced from snakemake's changelog.

7.29.0 (2023-06-21)

Features

  • introduce --workflow-profile for additional workflow specific profiles that overwrite global profiles; add ability to define key-value CLI flags like --set-threads or --set-resources as multi-level dictionaries in profile config yaml files (#2310) (9675c17)

Bug Fixes

7.28.3 (2023-06-16)

Bug Fixes

  • Detect pandas availability to select serializer (#2300) (e08a771)

Performance Improvements

  • avoid superflous mtime checks when the same file is referred to by multiple jobs (#2284) (eb6e2e1)

Documentation

  • update docs for azbatch and dockerhub ref (#2298) (908dbf1)

7.28.2 (2023-06-13)

Bug Fixes

  • fix pandas import handling in metadata persistence (27f7b40)

7.28.1 (2023-06-11)

Bug Fixes

  • Bump yte from >=1.0,<2.0 to >=1.5.1,<2.0 (#2275) (8c0b34f)
  • remove superfluous dependency (aad61a0)

7.28.0 (2023-06-11)

Features

... (truncated)

Commits
  • f1b8342 chore(main): release 7.29.0 (#2303)
  • 9b8c362 fix: removed distutils from snakemake (#2312)
  • 9675c17 feat: introduce --workflow-profile for additional workflow specific profiles ...
  • b561bde refactor: more format() and %s replaced by f-strings (#2313)
  • 4c34300 chore: fix conda custom prefix test on windows (#2309)
  • ab58c65 fix: addressing #2197 by allowing 256 character account names in slurm (#2198)
  • 92352b6 fix: Update init.py to move "file" param to "print" (#2291)
  • 04b6dab chore(main): release 7.28.3 (#2301)
  • eb6e2e1 perf: avoid superflous mtime checks when the same file is referred to by mult...
  • e08a771 fix: Detect pandas availability to select serializer (#2300)
  • Additional commits viewable in compare view

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Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.25.0 to 7.29.0.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.25.0...v7.29.0)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jun 23, 2023
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dependabot bot commented on behalf of github Jun 29, 2023

Superseded by #290.

@dependabot dependabot bot closed this Jun 29, 2023
@dependabot dependabot bot deleted the dependabot/pip/snakemake-7.29.0 branch June 29, 2023 01:16
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