Correct up taxonomy uri

ontop_config/emi-v0_2/emi-v0_2.obda

@@ -89,6 +89,6 @@ source		SELECT trim(replace(replace(replace(substring_index(tax_name, '"',2), '"
 
 mappingId	open_tree_life_synonym_2
 target		<https://tree.opentreeoflife.org/taxonomy/browse?id={uid}> skos:exactMatch <{iri_mapping}> . <{iri_mapping}> dcterms:identifier {external_id}^^xsd:string . 
-source		SELECT uid, substring_index( IF( sourceinfo like 'ncbi:%', replace(sourceinfo, 'ncbi:','https://www.uniprot.org/taxonomy/'), replace(sourceinfo, 'gbif:','https://www.gbif.org/species/')),',' ,1 ) as iri_mapping, substring_index(sourceinfo,',','1') as external_id  FROM open_tree_life_synonym where (sourceinfo like 'ncbi:%' or sourceinfo like 'gbif:%')
+source		SELECT uid, substring_index( IF( sourceinfo like 'ncbi:%', replace(sourceinfo, 'ncbi:','http://purl.uniprot.org/taxonomy/'), replace(sourceinfo, 'gbif:','https://www.gbif.org/species/')),',' ,1 ) as iri_mapping, substring_index(sourceinfo,',','1') as external_id  FROM open_tree_life_synonym where (sourceinfo like 'ncbi:%' or sourceinfo like 'gbif:%')
 ]]
 

ontop_config/open-tree-of-life/otl.obda

@@ -36,6 +36,6 @@ source		SELECT trim(replace(replace(replace(substring_index(tax_name, '"',2), '"
 
 mappingId	open_tree_life_synonym_2
 target		<https://tree.opentreeoflife.org/taxonomy/browse?id={uid}>  skos:exactMatch   <{iri_mapping}>. <{iri_mapping}> dcterms:identifier {external_id}^^xsd:string .
-source		SELECT uid, substring_index( IF( sourceinfo like 'ncbi:%', replace(sourceinfo, 'ncbi:','https://www.uniprot.org/taxonomy/'), replace(sourceinfo, 'gbif:','https://www.gbif.org/species/')),',' ,1 ) as iri_mapping, substring_index(sourceinfo,',','1') as external_id  FROM open_tree_life_synonym where (sourceinfo like 'ncbi:%' or sourceinfo like 'gbif:%')
+source		SELECT uid, substring_index( IF( sourceinfo like 'ncbi:%', replace(sourceinfo, 'ncbi:','http://purl.uniprot.org/taxonomy/'), replace(sourceinfo, 'gbif:','https://www.gbif.org/species/')),',' ,1 ) as iri_mapping, substring_index(sourceinfo,',','1') as external_id  FROM open_tree_life_synonym where (sourceinfo like 'ncbi:%' or sourceinfo like 'gbif:%')
 ]]
 

ontop_config/traits/traits.obda

@@ -24,7 +24,7 @@ up: http://purl.uniprot.org/core/
 
 mappingId	taxonomy
 target		<https://tree.opentreeoflife.org/taxonomy/browse?id={ott}>  skos:exactMatch   <http://purl.uniprot.org/taxonomy/{ncbi_otol}>, <http://purl.uniprot.org/taxonomy/{ncbi_wd}>,  <https://www.gbif.org/species/{gbif_otol_new}>, <https://www.eol.org/pages/{eol}>, <http://purl.obolibrary.org/obo/NCBITaxon_{ncbi_wd}>, <http://purl.obolibrary.org/obo/NCBITaxon_{ncbi_otol}> , <{WdID}> . <http://purl.uniprot.org/taxonomy/{ncbi_otol}> dcterms:identifier {ncbi_otol}^^xsd:int ; skos:inScheme <http://purl.uniprot.org/taxonomy>  . <http://purl.uniprot.org/taxonomy> rdfs:label "UniProtKB-NCBI organismal taxonomy" . <https://www.gbif.org/species/{gbif_otol_new}> dcterms:identifier {gbif_otol_new}^^xsd:int ; skos:inScheme <https://www.gbif.org/species> . <https://www.gbif.org/species> rdfs:label "The GBIF taxonomy" . <https://www.eol.org/pages/{eol}> dcterms:identifier {eol}^^xsd:int ; skos:inScheme <https://www.eol.org> . <https://www.eol.org> rdfs:label "Encyclopedia of Life" . <http://purl.obolibrary.org/obo/NCBITaxon_{ncbi_wd}> dcterms:identifier {ncbi_wd}^^xsd:int ; skos:inScheme <http://purl.obolibrary.org/obo/ncbitaxon.owl> . <http://purl.obolibrary.org/obo/ncbitaxon.owl>  rdfs:label "NCBI organismal classification" . <{WdID}> dcterms:identifier {wd_id}^^xsd:string ; a emi:Taxon ; skos:inScheme <http://www.wikidata.org/entity> . <http://www.wikidata.org/entity> rdfs:label "Wikidata entities".
-source		SELECT ott, IF(WdID = 'NA', Null, WdID) as WdID, replace(replace(WdID, 'http://www.wikidata.org/entity/',''),'NA',Null) as wd_id, IF(eol='NA', Null, eol) as eol, IF(gbif_otol='NA', Null, gbif_otol) as gbif_otol_new, IF(ncbi_wd='NA', Null, ncbi_wd) as ncbi_wd, IF(ncbi_otol='NA', Null, ncbi_otol)  as ncbi_otol FROM taxonomy where ott != 'NA' and WdID = 'NA' 
+source		SELECT DISTINCT IF(ott='NA',null,ott) as ott, IF(WdID = 'NA', null, WdID) as WdID, IF(WdID = 'NA', null, replace(WdID, 'http://www.wikidata.org/entity/','')) as wd_id, IF(eol='NA', null, eol) as eol, IF(gbif_otol='NA', null, gbif_otol) as gbif_otol_new, IF(ncbi_wd='NA', null, ncbi_wd) as ncbi_wd, IF(ncbi_otol='NA', null, ncbi_otol)  as ncbi_otol FROM taxonomy 
 
 
 ]]