Install

pip install git+ssh://[email protected]/djoerch/mrathon

Example calls

live visualisation

vis_bundle --window-size 500 --plot-size 1000 1000 --fps 12 --sl-per-frame 10 --reset-camera

with gif creation

vis_bundle --window-size 500 --plot-size 1000 1000 --outname sl_video_example.gif --fps 12 --sl-per-frame 100 --reset-camera

live vis with reference tractogram and ROIs

vis_bundle --window-size 100 --plot-size 1000 1000 --fps 12 --sl-per-frame 10 --tractogram tractogram.trk --regions seed_1.nii target_1.nii --reference-tractogram tractogram3.trk