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dkoslicki authored Jan 12, 2024
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# CMash

# Please Note: CMash has largely been supplanted by [Sourmash](https://github.com/sourmash-bio/sourmash). While Sourmash technically does not possess the ability to change k-mer sizes, we have decided to adopt Sourmash and incorporate our other results (eg. estimating ANI and AAI) into the Sourmash code base. Consider this repo depreciated.

CMash is a fast and accurate way to estimate the similarity of two sets. This is a probabilisitic data analysis approach, and uses containment min hashing. Please see the [associated paper]( https://doi.org/10.1101/2021.12.06.471436) for further details (and please cite if you use it):
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Liu, S., & Koslicki, D. (2021). CMash: fast, multi-resolution estimation of k-mer-based Jaccard and containment indices. bioRxiv. https://doi.org/10.1101/2021.12.06.471436
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