Using Rocker as base image

Dockerfile_anomanor

@@ -1,4 +1,4 @@
-FROM r-base
+FROM rocker/r-ver:latest
 
 LABEL maintainer="[email protected]"
 

application.yml

@@ -5,9 +5,9 @@ proxy:
   title: Anomanor Shinyproxy
   logo-url: https://menne-biomed.de/images/mennebiomed48.gif
   container-log-path: ./shinyproxy-logs
-  container-wait-time: 10000
+  container-wait-time: 20000
   port: 8080
-  heartbeat-timeout: 60000
+  heartbeat-timeout: 30000
   authentication: openid # tested ok with 'simple'
   admin-groups: admins
   landing-page: /app_direct/anomanor
@@ -51,7 +51,7 @@ proxy:
       ]
     container-image: anomanor
     container-network: anomanor-net
-    seats-per-container: 2
+    #seats-per-container: 2
     minimum-seats-available: 2
 
 

build_docker.sh

@@ -9,16 +9,18 @@
 # Use it whenever you see a <^M> or <<$'\r': command not found>> turn up in error message
 # use <<sudo install dos2unix>> to install
 #dos2unix ./inst/Renviron_devel
+set -euxo pipefail
+
 export R_CONFIG_ACTIVE=sa_admin # or sa_expert, sa_trainee
 set -o allexport;
 source ./inst/Renviron_devel
 set +o allexport
 
 export DOCKER_ANOMANOR_STANDALONE=TRUE
 echo "Active configuration: $R_CONFIG_ACTIVE DOCKER_ANOMANOR_STANDALONE=$DOCKER_ANOMANOR_STANDALONE"
-TAG="1.0.2"
+TAG="1.2.5"
 
-docker rm -f anomanor
+docker rm -f anomanor 2> /dev/null
 # To force rebuild
 #docker rmi -f anomanor
 docker system prune -f
@@ -31,7 +33,8 @@ docker build -f Dockerfile_anomanor \
   --build-arg DOCKER_ANOMANOR_STANDALONE \
   .
 
-docker push dmenne/anomanor:${TAG}
+# Push to github
+# docker push dmenne/anomanor:${TAG}
 
 
 # When run under Windows/wsl2, volumes can be found here:
@@ -53,4 +56,4 @@ docker ps -l
 sleep 3s
 docker logs anomanor
 
-echo "Connect with your browser at localhost:3838"
+echo Connect with your browser at localhost:3838

run_anomanor.sh

@@ -7,6 +7,10 @@
 # The following line can be commented out when there is no Windows-LF risk
 # Use it whenever you see a <^M> turn up in error message
 #dos2unix ./inst/Renviron_devel
+
+# https://vaneyckt.io/posts/safer_bash_scripts_with_set_euxo_pipefail/
+set -euxo pipefail
+
 set -o allexport;
 source ./.Renviron
 source ./inst/Renviron_devel