Merge pull request #130 from draeger-lab/2.1

2.1

.gitignore

@@ -1,19 +1,24 @@
+*.class
+*.dump
+.classpath
 .gradle/
 .idea/
-.settings/
-.classpath
 .project
-/build/
-/target/
-src/main/resources/edu/ucsd/sbrg/miriam/IdentifiersOrg-Registry.json
-/src/scripts/ModelPolisherTemplate.*
-ModelPolisher.iml
-jsbml.log
+.settings/
 /.DS_Store
+/.vscode/
+/bin
+/build/
 /minimalSysBio.xml
 /model_polisher.log
 /out
 /src/main/resources/edu/ucsd/sbrg/example_models/output
+/src/scripts/ModelPolisherTemplate.*
 /src/test/resources/edu/ucsd/sbrg/bigg/e_coli_core.zip
-*.class
-/bin
+/target/
+ModelPolisher.iml
+jsbml.log
+src/main/resources/edu/ucsd/sbrg/identifiersOrgRegistry/IdentifiersOrg-Registry.json
+/input/
+/app/build/
+/lib/build/