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A new configuration file MyLog4j.properties now defines how messages should be logged.
The new class COBRAsolver has been created for performing flux balance analysis based on the FBA algorithm in COBRApy and comes with an example use case COBRAsolverExample. At the moment, these use CPLEX as a solver backend. This might change in the future.
Adaptation
The project has been migrated from SVN (subversion) to Git, causing several subsequent changes and alterations.
Several third-party libraries were updated and subsequent adjustments needed to be performed to deal with changes in their API.
Minor changes and code improvements were performed.
A new Markdown-based README.md file was created for the project.