Remove build folder from repo #5 #11

draeger-lab · Jul 10, 2024 · 846ea35 · 846ea35
1 parent 8b77587
commit 846ea35
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Showing 157 changed files with 5 additions and 13,073 deletions.
diff --git a/.gitignore b/.gitignore
@@ -2,6 +2,9 @@
 .DS_Store
 __pycache__
 
+# Sphinx documentation
+docs/_build/
+
 build/*
 specimen.egg-info
 **/specimen.egg-info/* 
diff --git a/docs/Makefile b/docs/Makefile
@@ -6,7 +6,7 @@
 SPHINXOPTS    ?=
 SPHINXBUILD   ?= sphinx-build
 SOURCEDIR     = source
-BUILDDIR      = build
+BUILDDIR      = _build
 
 # Put it first so that "make" without argument is like "make help".
 help:

diff --git a/docs/build/doctrees/cmpb/about-pipeline.doctree b/docs/build/doctrees/cmpb/about-pipeline.doctree
diff --git a/docs/build/doctrees/cmpb/cmpb-config.doctree b/docs/build/doctrees/cmpb/cmpb-config.doctree
diff --git a/docs/build/doctrees/cmpb/run-pipeline.doctree b/docs/build/doctrees/cmpb/run-pipeline.doctree
diff --git a/docs/build/doctrees/dev-notes.doctree b/docs/build/doctrees/dev-notes.doctree
diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/doctrees/help.doctree b/docs/build/doctrees/help.doctree
diff --git a/docs/build/doctrees/hqtb/about-pipeline.doctree b/docs/build/doctrees/hqtb/about-pipeline.doctree
diff --git a/docs/build/doctrees/hqtb/hqtb-config.doctree b/docs/build/doctrees/hqtb/hqtb-config.doctree
diff --git a/docs/build/doctrees/hqtb/run-pipeline.doctree b/docs/build/doctrees/hqtb/run-pipeline.doctree
diff --git a/docs/build/doctrees/hqtb/step-desc/analysis.doctree b/docs/build/doctrees/hqtb/step-desc/analysis.doctree
diff --git a/docs/build/doctrees/hqtb/step-desc/bidirect_blast.doctree b/docs/build/doctrees/hqtb/step-desc/bidirect_blast.doctree
diff --git a/docs/build/doctrees/hqtb/step-desc/gen_draft.doctree b/docs/build/doctrees/hqtb/step-desc/gen_draft.doctree
diff --git a/docs/build/doctrees/hqtb/step-desc/refine-parts/annot.doctree b/docs/build/doctrees/hqtb/step-desc/refine-parts/annot.doctree
diff --git a/docs/build/doctrees/hqtb/step-desc/refine-parts/cleanup.doctree b/docs/build/doctrees/hqtb/step-desc/refine-parts/cleanup.doctree
diff --git a/docs/build/doctrees/hqtb/step-desc/refine-parts/extension.doctree b/docs/build/doctrees/hqtb/step-desc/refine-parts/extension.doctree
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diff --git a/docs/build/doctrees/hqtb/step-desc/refinement.doctree b/docs/build/doctrees/hqtb/step-desc/refinement.doctree
diff --git a/docs/build/doctrees/hqtb/step-desc/validation.doctree b/docs/build/doctrees/hqtb/step-desc/validation.doctree
diff --git a/docs/build/doctrees/index.doctree b/docs/build/doctrees/index.doctree
diff --git a/docs/build/doctrees/installation.doctree b/docs/build/doctrees/installation.doctree
diff --git a/docs/build/doctrees/modules/classes.doctree b/docs/build/doctrees/modules/classes.doctree
diff --git a/docs/build/doctrees/modules/cmd.doctree b/docs/build/doctrees/modules/cmd.doctree
diff --git a/docs/build/doctrees/modules/cmpb.doctree b/docs/build/doctrees/modules/cmpb.doctree
diff --git a/docs/build/doctrees/modules/core.doctree b/docs/build/doctrees/modules/core.doctree
diff --git a/docs/build/doctrees/modules/hqtb.doctree b/docs/build/doctrees/modules/hqtb.doctree
diff --git a/docs/build/doctrees/modules/util.doctree b/docs/build/doctrees/modules/util.doctree
diff --git a/docs/build/doctrees/overview-pipes.doctree b/docs/build/doctrees/overview-pipes.doctree
diff --git a/docs/build/doctrees/pipeline_idea.doctree b/docs/build/doctrees/pipeline_idea.doctree
diff --git a/docs/build/doctrees/specimen.doctree b/docs/build/doctrees/specimen.doctree
diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
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diff --git a/docs/build/html/_images/PGAB_constr.png b/docs/build/html/_images/PGAB_constr.png
diff --git a/docs/build/html/_images/cmpb.png b/docs/build/html/_images/cmpb.png
diff --git a/docs/build/html/_images/cmpb_pipeline-overview.png b/docs/build/html/_images/cmpb_pipeline-overview.png
diff --git a/docs/build/html/_images/hqtb.png b/docs/build/html/_images/hqtb.png
diff --git a/docs/build/html/_images/hqtb_pipeline-overview.png b/docs/build/html/_images/hqtb_pipeline-overview.png
diff --git a/docs/build/html/_images/pgab_pipeline-overview.png b/docs/build/html/_images/pgab_pipeline-overview.png
diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html