Involving in Organoids Growth and Recreation – Development of an Intelligent OrgaTracker System for Multi-Dimensional Organoid Analysis The system is divided into three parts:
The first part realizes organoid tracking and segmentation and organoid fusion capture.
The second part shows the quantitative budding and the structural analysis of mouse intestinal organoids from day 0 to day 4.
The third part shows the generation of organoids from sketches.
Clone this project:
git clone [email protected]:duxuan11/OrgaTracker.git
pip install -r requirements.txt
Run the demo:
cd OrgaTracker/organoid_tracking/yolov5-unet-track
python test.py --data data/image/
cd Intestinal_organoids_analysis/crypt_quantization or cd Intestinal_organoids_analysis/structured_analysis
python test.py --data data/image/
cd Organoid_sketches_to_images/pix2pix
python organ_test.py --dataroot ./datasets/edges2organoids --name edges2organoids_pix2pix --model pix2pix --direction AtoB