pysindy.yml

# Rerun experiments on new pysindy commits
# Only keep this file if you want to maintain your examples with future
# breaking changes in pysindy.  If at some point you want to stop updating
# the example to keep up with breaking changes, pin the versions of all
# dependencies and delete this file.  You may still make changes to the
# experiment afterwards.
name: pysindy-commit

# Ideally, this workflow would be triggered from each change to pysindy
# But not sure how to do that yet, so just run it every other week
# on: workflow_dispatch

on:
  schedule:
    # run twice a month during times when hopefully few other jobs are scheduled
    - cron: '0 12 6,21 * *'


jobs:
  find-notebooks:
    runs-on: ubuntu-latest
    outputs:
      paths: ${{ steps.find-notebooks.outputs.paths }}

    steps:
      - name: List Files
        id: find-notebooks
        uses: mirko-felice/list-files-action@v3.0.5
        with:
          repo: ${{ github.repository }}
          ref: ${{ github.ref }}
          path: "examples"
          ext: ".ipynb"
  run-notebooks:
    runs-on: ubuntu-latest
    needs: find-notebooks
    strategy:
      matrix:
        files: ${{ fromJson(needs.find-notebooks.outputs.paths) }}

    steps:
    - uses: actions/checkout@v3
    - name: "Set up Python"
      uses: actions/setup-python@v3
      with:
        python-version: "3.10"
    - name: Install dependencies
      run: pip install -r examples/requirements.txt
    - name: "Install most current pysindy"
      run: pip install pysindy[sbr,cvxpy,miosr] @ git+https://github/dynamicslab/pysindy@master
    - name: "Run notebooks"
      run: |
        jupyter nbconvert --execute --to notebook  --inplace ${{ matrix.files }}