fix commit issue #141
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| name: Build slims | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| paths: | |
| - 'config/*' | |
| push: | |
| paths: | |
| - 'config.yaml' | |
| - '.github/workflows/build.yml' | |
| - './config/*' | |
| schedule: | |
| - cron: 1 0 1 1-12 * | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| # Get slimmer and robot | |
| - name: add slimmer and robot URLs to environment | |
| run: | | |
| echo $(java --version) | |
| config_file="config.yaml" | |
| robot_jar="" | |
| robot="" | |
| slimmer="" | |
| while IFS=":" read -r key value; do | |
| key=$(echo "$key" | tr -d '[:space:]') | |
| case "$key" in | |
| robot-jar) | |
| robot_jar=$(echo "$value" | tr -d '[:space:]') | |
| ;; | |
| robot-wrapper) | |
| robot=$(echo "$value" | tr -d '[:space:]') | |
| ;; | |
| slimmer) | |
| slimmer=$(echo "$value" | tr -d '[:space:]') | |
| ;; | |
| esac | |
| done < "$config_file" | |
| echo SLIMMER: $slimmer | |
| echo ROBOT JAR: $robot_jar | |
| echo ROBOT WRAPPER: $robot | |
| echo 'slimmer='${slimmer}'' >> $GITHUB_ENV | |
| echo 'robot='${robot}'' >> $GITHUB_ENV | |
| echo 'robot_jar='${robot_jar}'' >> $GITHUB_ENV | |
| - name: get slimmer | |
| run: wget ${{ env.slimmer }} | |
| - name: get robot | |
| run: | | |
| wget ${{ env.robot }} | |
| wget ${{ env.robot_jar}} | |
| # slim all ontologies | |
| # Authorize running slim script | |
| - name: authorize running slim scripts | |
| run: chmod 755 scripts/src/build-workflow/*.sh | |
| # Slim aopo | |
| - name: slim-aopo | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh aopo | |
| # Slim bao | |
| - name: slim-bao | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh bao | |
| # Slim bfo | |
| - name: slim-bfo | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh bfo | |
| # Slim bto | |
| - name: slim-bto | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh bto | |
| # Slim ccont | |
| - name: slim-ccont | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh ccont | |
| # Slim cheminf | |
| - name: slim-cheminf | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh cheminf | |
| # Slim chebi | |
| - name: slim-chebi | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh chebi | |
| # Slim chmo | |
| - name: slim-chmo | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh chmo | |
| # Slim clo | |
| - name: slim-clo | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh clo | |
| # Slim efo | |
| - name: slim-efo | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh efo | |
| # Slim envo | |
| - name: slim-envo | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh envo | |
| # Slim fabio | |
| - name: slim-fabio | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh fabio | |
| # Slim go | |
| - name: slim-go | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh go | |
| # Slim iao | |
| - name: slim-iao | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh iao | |
| # Slim ncit | |
| - name: slim-ncit | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh ncit | |
| # Slim npo | |
| - name: slim-npo | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh npo | |
| # Slim oae | |
| - name: slim-oae | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh oae | |
| # Slim obcs | |
| - name: slim-obcs | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh obcs | |
| # Slim obi | |
| - name: slim-obi | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh obi | |
| # Slim pato | |
| - name: slim-pato | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh pato | |
| # Slim sio | |
| - name: slim-sio | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh sio | |
| # Slim uberon | |
| - name: slim-uberon | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh uberon | |
| # Slim uo | |
| - name: slim-uo | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh uo | |
| # Slim msio | |
| - name: slim-msio | |
| if: always() | |
| run: bash scripts/src/build-workflow/slim.sh msio | |
| # apply props bao | |
| - name: Apply props bao | |
| if: always() | |
| run: bash scripts/src/build-workflow/props.sh bao | |
| # apply props npo | |
| - name: Apply props npo | |
| if: always() | |
| run: bash scripts/src/build-workflow/props.sh npo | |
| # apply props sio | |
| - name: Apply props sio | |
| if: always() | |
| run: bash scripts/src/build-workflow/props.sh sio | |
| - name: Apply props cheminf | |
| if: always() | |
| run: bash scripts/src/build-workflow/props.sh cheminf | |
| - name: Apply props ro | |
| if: always() | |
| run: bash scripts/src/build-workflow/props.sh ro | |
| # Commit and push | |
| - name: Commit OWL files | |
| if: ${{ github.event_name != 'pull_request' || github.event.action != 'closed' || github.event.pull_request.merged == false }} # do not try to commit if not ran in branch but on PR | |
| run: | | |
| if [[ "${{ github.ref_name }}" == *"merge"* ]]; then | |
| exit 0 | |
| fi | |
| git checkout "${{ github.ref_name }}" | |
| git pull | |
| git add external-dev/*.owl | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "Slimmer bot" | |
| # Check if there are changes to commit | |
| if git diff-index --quiet HEAD --; then | |
| echo "No changes to commit." | |
| else | |
| git commit -m "Actions - slim updated" ./external-dev/*.owl || true | |
| fi | |
| # Check if there are changes to push | |
| if [[ $(git rev-parse --abbrev-ref HEAD) == "${{ github.ref_name }}" ]]; then | |
| if [ -n "$(git cherry -v)" ]; then | |
| git push || echo "Push failed." | |
| else | |
| echo "No changes to push." | |
| fi | |
| fi | |