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Actions - slim updated
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actions-user committed Oct 8, 2024
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8 changes: 4 additions & 4 deletions external-dev/aopo-slim.owl
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Expand Up @@ -44,15 +44,15 @@
<terms:license rdf:resource="https://hpo.jax.org/app/license"/>
<pav:importedFrom>https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-07-01 01:44:32</oboInOwl:date>
<oboInOwl:date>27:05:2024 20:32</oboInOwl:date>
<oboInOwl:date>2024-10-08 14:02:40</oboInOwl:date>
<oboInOwl:date>27:07:2024 19:59</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:default-namespace>human_phenotype</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:logical-definition-view-relation>has_part</oboInOwl:logical-definition-view-relation>
<oboInOwl:saved-by>chebi</oboInOwl:saved-by>
<rdfs:comment>Author: ChEBI curation team</rdfs:comment>
<rdfs:comment>ChEBI Release version 234</rdfs:comment>
<rdfs:comment>ChEBI Release version 236</rdfs:comment>
<rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
<rdfs:comment>Contact:
Stephan Schurer
Expand Down Expand Up @@ -102,7 +102,7 @@ Uma Vempati, Hande Küçük, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Vanc
<owl:versionInfo>2.8.6</owl:versionInfo>
<owl:versionInfo>2.8.8</owl:versionInfo>
<owl:versionInfo>2.8.9</owl:versionInfo>
<owl:versionInfo>2024-06-27</owl:versionInfo>
<owl:versionInfo>2024-08-13</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

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6 changes: 3 additions & 3 deletions external-dev/bao-slim-prop.owl
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@@ -1,14 +1,14 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="http://www.bioassayontology.org/bao/bao_complete_merged-props.owl#"
xml:base="http://www.bioassayontology.org/bao/bao_complete_merged-props.owl"
<rdf:RDF xmlns="http://www.bioassayontology.org/bao/bao_complete_merged.owl#"
xml:base="http://www.bioassayontology.org/bao/bao_complete_merged.owl"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://www.bioassayontology.org/bao/bao_complete_merged-prop.owl"/>
<owl:Ontology rdf:about="http://www.bioassayontology.org/bao/bao_complete_merged.owl"/>



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2 changes: 1 addition & 1 deletion external-dev/bao-slim.owl
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Expand Up @@ -24,7 +24,7 @@
<dc:license rdf:resource="https://creativecommons.org/licenses/by-sa/4.0/"/>
<pav:importedFrom>http://bioassayontology.org/bao/bao_complete_merged.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-07-01 01:44:39</oboInOwl:date>
<oboInOwl:date>2024-10-08 14:02:48</oboInOwl:date>
<rdfs:comment>Contact:
Stephan Schurer
stephan dot schurer at gmail dot com</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/bfo-slim.owl
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Expand Up @@ -45,7 +45,7 @@
<dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/bfo/classes-only.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-07-01 01:44:41</oboInOwl:date>
<oboInOwl:date>2024-10-08 14:02:50</oboInOwl:date>
<rdfs:comment xml:lang="en">The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (&quot;bfo_classes_only.owl&quot;) includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (&quot;bfo.owl&quot;). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.

If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies.
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2 changes: 1 addition & 1 deletion external-dev/bto-slim.owl
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Expand Up @@ -20,7 +20,7 @@
<pav:importedFrom>http://purl.obolibrary.org/obo/bto.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-07-01 01:44:46</oboInOwl:date>
<oboInOwl:date>2024-10-08 14:02:55</oboInOwl:date>
<oboInOwl:date>23:10:2021 16:56</oboInOwl:date>
<oboInOwl:default-namespace>BrendaTissueOBO</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
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2 changes: 1 addition & 1 deletion external-dev/ccont-slim.owl
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Expand Up @@ -15,7 +15,7 @@
<pav:importedFrom>https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl</pav:importedFrom>
<efo:creator>Matthias Ganzinger, [email protected]</efo:creator>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-07-01 01:44:47</oboInOwl:date>
<oboInOwl:date>2024-10-08 14:02:56</oboInOwl:date>
<rdfs:label>cell culture ontology (CCONT)</rdfs:label>
<owl:versionInfo>1.1</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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6 changes: 3 additions & 3 deletions external-dev/chebi-slim.owl
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Expand Up @@ -17,13 +17,13 @@
<owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/chebi-slim.owl">
<pav:importedFrom>http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-07-01 01:46:26</oboInOwl:date>
<oboInOwl:date>27:05:2024 20:32</oboInOwl:date>
<oboInOwl:date>2024-10-08 14:03:37</oboInOwl:date>
<oboInOwl:date>27:07:2024 19:59</oboInOwl:date>
<oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>chebi</oboInOwl:saved-by>
<rdfs:comment>Author: ChEBI curation team</rdfs:comment>
<rdfs:comment>ChEBI Release version 234</rdfs:comment>
<rdfs:comment>ChEBI Release version 236</rdfs:comment>
<rdfs:comment>ChEBI subsumes and replaces the Chemical Ontology first</rdfs:comment>
<rdfs:comment>For any queries contact [email protected]</rdfs:comment>
<rdfs:comment>developed by Michael Ashburner &amp; Pankaj Jaiswal.</rdfs:comment>
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6 changes: 3 additions & 3 deletions external-dev/cheminf-slim-prop.owl
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@@ -1,12 +1,12 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf-props.owl#"
xml:base="http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf-props.owl"
<rdf:RDF xmlns="http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl#"
xml:base="http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf-slim.owl"/>
<owl:Ontology rdf:about="http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl"/>



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2 changes: 1 addition & 1 deletion external-dev/cheminf-slim.owl
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Expand Up @@ -80,7 +80,7 @@
<terms:license>http://creativecommons.org/publicdomain/zero/1.0/</terms:license>
<pav:importedFrom>http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-07-01 01:44:50</oboInOwl:date>
<oboInOwl:date>2024-10-08 14:02:59</oboInOwl:date>
<rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
<rdfs:comment>Document containing upporting external terms</rdfs:comment>
<rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>
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2 changes: 1 addition & 1 deletion external-dev/chmo-slim.owl
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Expand Up @@ -19,7 +19,7 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/chmo.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-07-01 01:46:31</oboInOwl:date>
<oboInOwl:date>2024-10-08 14:03:43</oboInOwl:date>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:saved-by>batchelorc</oboInOwl:saved-by>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
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48 changes: 32 additions & 16 deletions external-dev/clo-slim.owl
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Expand Up @@ -39,9 +39,9 @@
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/cl.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2024-07-01 01:46:43</oboInOwl:date>
<rdfs:comment>See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], University at Buffalo.</rdfs:comment>
<owl:versionInfo>2024-05-15</owl:versionInfo>
<oboInOwl:date>2024-10-08 14:03:55</oboInOwl:date>
<rdfs:comment>See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], university at buffalo.</rdfs:comment>
<owl:versionInfo>2024-09-26</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>

Expand Down Expand Up @@ -431,6 +431,15 @@ WHERE {



<!-- http://purl.obolibrary.org/obo/go#gocheck_obsoletion_candidate -->


<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#gocheck_obsoletion_candidate">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/go#goslim_agr -->


Expand Down Expand Up @@ -1159,13 +1168,27 @@ WHERE {



<!-- http://purl.org/dc/terms/description -->


<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description"/>



<!-- http://purl.org/dc/terms/license -->


<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>



<!-- http://purl.org/dc/terms/title -->


<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title"/>



<!-- http://purl.org/pav/importedFrom -->


Expand Down Expand Up @@ -1210,18 +1233,14 @@ WHERE {
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by">
<rdfs:label>created by</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>



<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date">
<rdfs:label>creation date</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date"/>



Expand Down Expand Up @@ -1323,9 +1342,7 @@ WHERE {
<!-- http://www.geneontology.org/formats/oboInOwl#id -->


<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
<rdfs:label>id</rdfs:label>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>



Expand Down Expand Up @@ -1599,7 +1616,7 @@ WHERE {
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<obo:IAO_0000115>A cell that is maintained or propagated in a controlled artificial environment for use in an investigation.</obo:IAO_0000115>
<terms:contributor rdf:resource="https://orcid.org/0000-0001-9114-8737"/>
<oboInOwl:creation_date>2012-01-12T09:58:38Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2012-01-12T09:58:38Z</oboInOwl:creation_date>
<rdfs:comment>&apos;In vitro&apos;, translating literally to &apos;in glass&apos;, typically refers to a controlled, often sterile, laboratory setting where cells or other specimens are placed by some agent for the purpose of studying or manipulating them as part of some research investigation. &apos;In vitro&apos; is intended to contrast with &apos;native&apos;,which refers to cells or other biological entities that are found in a natural setting. It describes unicellular organisms removed from a natural environement and multicellular organism cells removed from an organism, or cells derived in culture from such displaced cells.</rdfs:comment>
<rdfs:label>cell in vitro</rdfs:label>
</owl:Class>
Expand All @@ -1616,12 +1633,11 @@ WHERE {


<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0001035">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000010"/>
<obo:IAO_0000115>A connective tissue cell found in bone.</obo:IAO_0000115>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0001-9990-8331"/>
<oboInOwl:creation_date>2011-11-16T04:28:16Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2011-11-16T04:28:16Z</oboInOwl:creation_date>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas"/>
<rdfs:label>bone cell</rdfs:label>
Expand All @@ -1643,7 +1659,7 @@ WHERE {
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0001035"/>
<obo:IAO_0000115>Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells.</obo:IAO_0000115>
<terms:contributor rdf:resource="https://orcid.org/0000-0001-9114-8737"/>
<oboInOwl:creation_date>2012-06-27T10:57:21Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2012-06-27T10:57:21Z</oboInOwl:creation_date>
<oboInOwl:hasExactSynonym>osteoprogenitor cell</oboInOwl:hasExactSynonym>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/cl#cellxgene_subset"/>
<rdfs:label>preosteoblast</rdfs:label>
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