Merge pull request #697 from enanomapper/sbd4nano-batch-5

5th batch of SbD4Nano terms
enanomapper · Apr 19, 2024 · bbe5472 · bbe5472
2 parents 440f3ce + 42dd6c9
commit bbe5472
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diff --git a/config/go.iris b/config/go.iris
@@ -16,3 +16,8 @@
 +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0051493 regulation of cytoskeleton organization
 +D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0141085 regulation of inflammasome-mediated signaling pathway
 +(http://purl.obolibrary.org/obo/GO_0003824):http://purl.obolibrary.org/obo/GO_0016175 superoxide-generating NAD(P)H oxidase activity
++D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO:0016192 vesicle-mediated transport
++D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0002433 immune response-regulating cell surface receptor signaling pathway involved in phagocytosis
++(http://purl.obolibrary.org/obo/GO_0003824):http://purl.obolibrary.org/obo/GO_0004457 lactate dehydrogenase activity
++(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0070527 platelet aggregation
++D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0034121 regulation of TLR pathway
diff --git a/config/ncit.iris b/config/ncit.iris
@@ -120,3 +120,4 @@
 +(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C14271 S cerevisiae
 +(http://www.bioassayontology.org/bao#BAO_0000523):http://purl.obolibrary.org/obo/NCIT_C77680 injection site
 +(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/NCIT_C12428 trachea
++D(http://purl.obolibrary.org/obo/CHEBI_59999):http://purl.obolibrary.org/obo/NCIT_C1940 element
diff --git a/internal-dev/bao-ext.owl b/internal-dev/bao-ext.owl
@@ -335,6 +335,16 @@
         </rdfs:subClassOf>
     </owl:Class>
 
+
+    <!-- http://purl.enanomapper.net/onto/ENM_8553741 -->
+
+    <owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_8553741">
+        <rdfs:subClassOf rdf:resource="http://www.bioassayontology.org/bao#BAO_0002752"/>
+        <rdfs:subClassOf rdf:resource="http://www.bioassayontology.org/bao#BAO_0080042"/>
+        <rdfs:subClassOf rdf:resource="http://purl.enanomapper.org/onto/ENM_0000045"/>
+        <rdfs:label xml:lang="en">nanoparticle uptake efficiency endpoint</rdfs:label>
+    </owl:Class>
+
 </rdf:RDF>
 
 <!-- Generated by the OWL API (version 4.2.8.20170104-2310) https://github.com/owlcs/owlapi -->

diff --git a/internal-dev/cheminf-ext.owl b/internal-dev/cheminf-ext.owl
@@ -114,6 +114,12 @@
         <rdfs:label xml:lang="en">BET surface area endpoint</rdfs:label>
     </owl:Class>
 
+    <!-- http://purl.enanomapper.net/onto/ENM_0310210 -->
+
+    <owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_0310210">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+        <rdfs:label xml:lang="en">Interaction potential</rdfs:label>
+    </owl:Class>
 </rdf:RDF>
 
 

diff --git a/internal-dev/go-ext.owl b/internal-dev/go-ext.owl
@@ -30,4 +30,19 @@
         <rdfs:label xml:lang="en">Enzymatic degradation</rdfs:label>
     </owl:Class>   
 
+    <!-- http://purl.enanomapper.net/onto/ENM_2866074 -->
+    <owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_2866074">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0002433"/>
+        <rdfs:label xml:lang="en">CR-mediated phagocytic pathway</rdfs:label>
+        <rdfs:label xml:lang="en">Complement receptor-mediated phagocytic pathway</rdfs:label>
+    </owl:Class>  
+
+    <!-- http://purl.enanomapper.net/onto/ENM_9822611 -->
+    <owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_9822611">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0002433"/>
+        <rdfs:label xml:lang="en">MR-mediated phagocytic pathway</rdfs:label>
+        <rdfs:label xml:lang="en">Mannose receptor-mediated phagocytic pathway</rdfs:label>
+    </owl:Class> 
+
+
 </rdf:RDF>
diff --git a/internal-dev/obi-ext.owl b/internal-dev/obi-ext.owl
@@ -431,6 +431,12 @@
     <owl:Class rdf:about="http://purl.enanomapper.org/onto/ENM_8000279">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000070"/>
         <rdfs:label xml:lang="en">NP crossing ICP-OES</rdfs:label>
+	<rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://www.bioassayontology.org/bao#BAO_0000208"/>
+                <owl:someValuesFrom rdf:resource="http://purl.enanomapper.net/onto/ENM_8553741"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
     </owl:Class>
 
 

diff --git a/internal-dev/pato-ext.owl b/internal-dev/pato-ext.owl
@@ -61,5 +61,13 @@
     	<obo:IAO_0000115>Structural quality of a material containing pores with diameters between 2 and 50 nm</obo:IAO_0000115>
     </owl:Class>
 
+    <!-- http://purl.enanomapper.net/onto/ENM_2169340 -->
+
+    <owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_2169340">
+    	<rdfs:subClassOf rdf:resource="http://purl.bioontology.org/ontology/npo#NPO_1597"/>
+    	<rdfs:label xml:lang="en">Pathogen-associated molecular patterns</rdfs:label>
+    	<obo:IAO_0000115>parts of biomolecules associated with pathogens, such as bacteria, viruses, fungi, and other microorganisms, and can be recognized by pattern recognition receptors (PRRs) of the innate immune system</obo:IAO_0000115>
+    </owl:Class>
+
 
 </rdf:RDF>
diff --git a/internal-dev/uo-ext.owl b/internal-dev/uo-ext.owl
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.enanomapper.net/onto/internal/ext-ext.owl#"
+     xml:base="http://purl.enanomapper.net/onto/internal/ext-ext.owl"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+     xmlns:owl="http://www.w3.org/2002/07/owl#"
+     xmlns:xml="http://www.w3.org/XML/1998/namespace"
+     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:obo="http://purl.obolibrary.org/obo/"
+     xmlns:dc="http://purl.org/dc/elements/1.1/">
+
+    <owl:Ontology rdf:about="http://enanomapper.github.io/ontologies/internal/ext-ext.owl">
+        <dc:contributor>Javier Millan Acosta</dc:contributor>
+	<dc:license>CC-BY 4.0 https://creativecommons.org/licenses/by/4.0/</dc:license>
+	<rdfs:comment>This ontology contains proposed extensions to UO, which in due course will be submitted to the ext. </rdfs:comment>
+    </owl:Ontology>
+
+    <!-- http://purl.enanomapper.net/onto/ENM_6804785 -->
+
+    <owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_6804785">
+        <rdfs:subClassOf rdf:resource="http://www.bioassayontology.org/bao#BAO_0002752"/>
+        <rdfs:label xml:lang="en">ng/μg protein</rdfs:label>
+    </owl:Class>
+
+</rdf:RDF>