v1.2.0

Added

• Logging to file for artic commands ({barcode}.artic.log.txt)
• --override_basecaller_cfg parameter for cases where automatic basecall model detection fails or users wish to override the automatic choice

Removed

• Unused nextclade_version parameter
• The --medaka_variant_model parameter as the appropriate Medaka model is now automatically determined from the input data
• The now redundant --basecaller_cfg parameter as its value is now automatically detected from the input data on a per-sample basis

Changed

• Reconciled workflow with wf-template v5.2.1
• Updated Medaka to v1.12.1