Merge pull request #88 from epicentre-msf/import-session

import session
epicentre-msf · Jan 13, 2025 · 31df36b · 31df36b
2 parents a92486b + 8c8d37e
commit 31df36b
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diff --git a/.quarto/idx/about.qmd.json b/.quarto/idx/about.qmd.json
diff --git a/.quarto/idx/index.qmd.json b/.quarto/idx/index.qmd.json
diff --git a/.quarto/xref/1e358ed2 b/.quarto/xref/1e358ed2
diff --git a/.quarto/xref/INDEX b/.quarto/xref/INDEX
@@ -46,5 +46,8 @@
   },
   "sessions_core/01_introduction.qmd": {
     "01_introduction.html": "db6fa68a"
+  },
+  "sessions_core/02_import_data.qmd": {
+    "02_import_data.html": "a7ed54f7"
   }
 }
diff --git a/_quarto.yml b/_quarto.yml
@@ -25,6 +25,6 @@ format:
       echo: true
       eval: false
 
-comments: 
-    hypothesis: false
+comments:
+  hypothesis: true
 
diff --git a/data/clean/simulated_measles_lab_data_fr.rds b/data/clean/simulated_measles_lab_data_fr.rds
diff --git a/data/clean/simulated_measles_ll_fr.rds b/data/clean/simulated_measles_ll_fr.rds
diff --git a/data/raw/msf_laboratory_moissala_2023-09-24_fr.xlsx b/data/raw/msf_laboratory_moissala_2023-09-24_fr.xlsx
diff --git a/data/raw/msf_linelist_moissala_2023-09-24.csv b/data/raw/msf_linelist_moissala_2023-09-24.csv
diff --git a/data/raw/msf_linelist_moissala_2023-09-24.xlsx b/data/raw/msf_linelist_moissala_2023-09-24.xlsx
diff --git a/data/raw/msf_linelist_moissala_2023-09-24_fr.csv b/data/raw/msf_linelist_moissala_2023-09-24_fr.csv
diff --git a/data/raw/msf_linelist_moissala_2023-09-24_fr.xlsx b/data/raw/msf_linelist_moissala_2023-09-24_fr.xlsx
diff --git a/data/raw/multiple/msf_linelist_moissala_2023-09-24_bedaya.xlsx b/data/raw/multiple/msf_linelist_moissala_2023-09-24_bedaya.xlsx
diff --git a/data/raw/multiple/msf_linelist_moissala_2023-09-24_bekourou.xlsx b/data/raw/multiple/msf_linelist_moissala_2023-09-24_bekourou.xlsx
diff --git a/data/raw/multiple/msf_linelist_moissala_2023-09-24_bouna.xlsx b/data/raw/multiple/msf_linelist_moissala_2023-09-24_bouna.xlsx
diff --git a/data/raw/multiple/msf_linelist_moissala_2023-09-24_danamadji.xlsx b/data/raw/multiple/msf_linelist_moissala_2023-09-24_danamadji.xlsx
diff --git a/data/raw/multiple/msf_linelist_moissala_2023-09-24_koumogo.xlsx b/data/raw/multiple/msf_linelist_moissala_2023-09-24_koumogo.xlsx
diff --git a/data/raw/multiple/msf_linelist_moissala_2023-09-24_moissala.xlsx b/data/raw/multiple/msf_linelist_moissala_2023-09-24_moissala.xlsx
diff --git a/docs/about.html b/docs/about.html
@@ -68,6 +68,12 @@
     "search-label": "Search"
   }
 }</script>
+<script async="" src="https://hypothes.is/embed.js"></script>
+<script>
+  window.document.addEventListener("DOMContentLoaded", function (_event) {
+    document.body.classList.add('hypothesis-enabled');
+  });
+</script>
 <script type="text/javascript" src="../script.js"></script>
 
 

diff --git a/docs/explore.html b/docs/explore.html
@@ -100,6 +100,12 @@
     }
   })
   </script>
+<script async="" src="https://hypothes.is/embed.js"></script>
+<script>
+  window.document.addEventListener("DOMContentLoaded", function (_event) {
+    document.body.classList.add('hypothesis-enabled');
+  });
+</script>
 <script type="text/javascript" src="../script.js"></script>
 
   <script src="https://cdnjs.cloudflare.com/polyfill/v3/polyfill.min.js?features=es6"></script>
@@ -182,7 +188,7 @@
 <!-- margin-sidebar -->
     <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
 
-    <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-listing-category category-unnumbered"><div class="category" data-category="Q29yZQ==">Core</div><div class="category" data-category="RGF0YSUyMFR5cGVz">Data Types</div><div class="category" data-category="UiUyMEJhc2ljcw==">R Basics</div></div></div>
+    <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-listing-category category-unnumbered"><div class="category" data-category="Q29yZQ==">Core</div><div class="category" data-category="RGF0YSUyMEltcG9ydA==">Data Import</div><div class="category" data-category="RGF0YSUyMFR5cGVz">Data Types</div><div class="category" data-category="UiUyMEJhc2ljcw==">R Basics</div><div class="category" data-category="UlN0dWRpbw==">RStudio</div></div></div>
 <!-- main -->
 <main class="content" id="quarto-document-content">
 
@@ -217,7 +223,43 @@ <h1 class="title">Explore</h1>
 
 <div class="quarto-listing quarto-listing-container-grid" id="listing-listing">
 <div class="list grid quarto-listing-cols-3">
-<div class="g-col-1" data-index="0" data-categories="Q29yZSUyQ1IlMjBCYXNpY3MlMkNEYXRhJTIwVHlwZXM=" data-listing-date-sort="1736776849000" data-listing-file-modified-sort="1736776849576" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="24" data-listing-word-count-sort="4739">
+<div class="g-col-1" data-index="0" data-categories="Q29yZSUyQ1JTdHVkaW8lMkNEYXRhJTIwSW1wb3J0" data-listing-date-sort="1736806385000" data-listing-file-modified-sort="1736806385707" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="16" data-listing-word-count-sort="3107">
+<a href="./sessions_core/02_import_data.html" class="quarto-grid-link">
+<div class="quarto-grid-item card h-100 card-left">
+<p class="card-img-top">
+<img loading="lazy" src="./img/core/02_import/01_logo.png" class="thumbnail-image card-img" style="height: 150px;">
+</p>
+<div class="card-body post-contents">
+<h5 class="no-anchor card-title listing-title">
+Import data
+</h5>
+<div class="listing-categories">
+<div class="listing-category" onclick="window.quartoListingCategory('Q29yZQ=='); return false;">
+Core
+</div>
+<div class="listing-category" onclick="window.quartoListingCategory('UlN0dWRpbw=='); return false;">
+RStudio
+</div>
+<div class="listing-category" onclick="window.quartoListingCategory('RGF0YSUyMEltcG9ydA=='); return false;">
+Data Import
+</div>
+</div>
+<div class="card-text listing-description">
+Create an Rstudio project, install useful packages and start importing data to work in R
+</div>
+<div class="card-attribution card-text-small justify">
+<div class="listing-author">
+
+</div>
+<div class="listing-date">
+Jan 13, 2025
+</div>
+</div>
+</div>
+</div>
+</a>
+</div>
+<div class="g-col-1" data-index="1" data-categories="Q29yZSUyQ1IlMjBCYXNpY3MlMkNEYXRhJTIwVHlwZXM=" data-listing-date-sort="1736806336000" data-listing-file-modified-sort="1736806336695" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="24" data-listing-word-count-sort="4761">
 <a href="./sessions_core/01_introduction.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top"><img src="img/core/01_introduction/01_rstudio_interface_en.png" style="height: 150px;"  class="thumbnail-image card-img"/></p>
@@ -251,7 +293,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="1" data-categories="Q29yZQ==" data-listing-date-sort="1736773165000" data-listing-file-modified-sort="1736773165328" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="543">
+<div class="g-col-1" data-index="2" data-categories="Q29yZQ==" data-listing-date-sort="1736799825000" data-listing-file-modified-sort="1736799825748" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="543">
 <a href="./sessions_core/template.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top">

diff --git a/docs/img/core/02_import/01_logo.png b/docs/img/core/02_import/01_logo.png
diff --git a/docs/img/core/02_import/02_rproject.png b/docs/img/core/02_import/02_rproject.png
diff --git a/docs/img/core/02_import/03_do_not_save.png b/docs/img/core/02_import/03_do_not_save.png
diff --git a/docs/index.html b/docs/index.html
@@ -68,6 +68,12 @@
     "search-label": "Search"
   }
 }</script>
+<script async="" src="https://hypothes.is/embed.js"></script>
+<script>
+  window.document.addEventListener("DOMContentLoaded", function (_event) {
+    document.body.classList.add('hypothesis-enabled');
+  });
+</script>
 <script type="text/javascript" src="../script.js"></script>
 
 

diff --git a/docs/listings.json b/docs/listings.json
@@ -2,12 +2,14 @@
   {
     "listing": "/pathway.html",
     "items": [
-      "/sessions_core/01_introduction.html"
+      "/sessions_core/01_introduction.html",
+      "/sessions_core/02_import_data.html"
     ]
   },
   {
     "listing": "/explore.html",
     "items": [
+      "/sessions_core/02_import_data.html",
       "/sessions_core/01_introduction.html",
       "/sessions_core/template.html"
     ]

diff --git a/docs/pathway.html b/docs/pathway.html
@@ -100,6 +100,12 @@
     }
   })
   </script>
+<script async="" src="https://hypothes.is/embed.js"></script>
+<script>
+  window.document.addEventListener("DOMContentLoaded", function (_event) {
+    document.body.classList.add('hypothesis-enabled');
+  });
+</script>
 <script type="text/javascript" src="../script.js"></script>
 
   <script src="https://cdnjs.cloudflare.com/polyfill/v3/polyfill.min.js?features=es6"></script>
@@ -218,7 +224,7 @@ <h1 class="title">Pathway</h1>
 
 <div class="quarto-listing quarto-listing-container-default" id="listing-articles-links">
 <div class="list quarto-listing-default">
-<div class="quarto-post image-right" data-index="0" data-categories="Q29yZSUyQ1IlMjBCYXNpY3MlMkNEYXRhJTIwVHlwZXM=" data-listing-date-sort="1736776849000" data-listing-file-modified-sort="1736776849576" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="24" data-listing-word-count-sort="4739">
+<div class="quarto-post image-right" data-index="0" data-categories="Q29yZSUyQ1IlMjBCYXNpY3MlMkNEYXRhJTIwVHlwZXM=" data-listing-date-sort="1736806336000" data-listing-file-modified-sort="1736806336695" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="24" data-listing-word-count-sort="4761">
 <div class="thumbnail">
 <p><a href="./sessions_core/01_introduction.html" class="no-external"></a></p><a href="./sessions_core/01_introduction.html" class="no-external">
 <p class="card-img-top"><img src="img/core/01_introduction/01_rstudio_interface_en.png"  class="thumbnail-image card-img"/></p>
@@ -243,6 +249,31 @@ <h3 class="no-anchor listing-title">
 </a>
 </div>
 </div>
+<div class="quarto-post image-right" data-index="1" data-categories="Q29yZSUyQ1JTdHVkaW8lMkNEYXRhJTIwSW1wb3J0" data-listing-date-sort="1736806385000" data-listing-file-modified-sort="1736806385707" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="16" data-listing-word-count-sort="3107">
+<div class="thumbnail">
+<p><a href="./sessions_core/02_import_data.html" class="no-external"></a></p><a href="./sessions_core/02_import_data.html" class="no-external">
+<p><img loading="lazy" src="./img/core/02_import/01_logo.png" class="thumbnail-image"></p>
+</a><p><a href="./sessions_core/02_import_data.html" class="no-external"></a></p>
+</div>
+<div class="body">
+<h3 class="no-anchor listing-title">
+<a href="./sessions_core/02_import_data.html" class="no-external">Import data</a>
+</h3>
+<div class="listing-subtitle">
+<a href="./sessions_core/02_import_data.html" class="no-external"></a>
+</div>
+<div class="listing-description">
+<a href="./sessions_core/02_import_data.html" class="no-external">Create an Rstudio project, install useful packages and start importing data to work in R</a>
+</div>
+</div>
+<div class="metadata">
+<a href="./sessions_core/02_import_data.html" class="no-external">
+<div class="listing-date">
+Jan 13, 2025
+</div>
+</a>
+</div>
+</div>
 </div>
 <div class="listing-no-matching d-none">
 No matching items

diff --git a/docs/resources.html b/docs/resources.html
@@ -68,6 +68,12 @@
     "search-label": "Search"
   }
 }</script>
+<script async="" src="https://hypothes.is/embed.js"></script>
+<script>
+  window.document.addEventListener("DOMContentLoaded", function (_event) {
+    document.body.classList.add('hypothesis-enabled');
+  });
+</script>
 <script type="text/javascript" src="../script.js"></script>